Factsheet for PGSC0003DMT400034028

Subcellular Localization

min:

: max

Winner_takes_all: extracellular, endoplasmic reticulum, vacuole, cytosol, plasma membrane, golgi

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1
endoplasmic reticulum 4
golgi 4
extracellular 3
vacuole 3
plasma membrane 3
cytoskeleton 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, secretory
Any Predictor:	cytoskeleton, cytosol, mitochondrion, nucleus, secretory
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	endoplasmic reticulum, golgi, mitochondrion, nucleus
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	cytoskeleton
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc05g053940.2.1	Tomato	nucleus, plastid, unclear	100.0	100.0
GSMUA_Achr11P...	Banana	cytosol	92.12	92.12
GSMUA_Achr8P15030_001	Banana	cytosol	91.63	91.63
KRH01059	Soybean	endoplasmic reticulum	90.15	90.59
GSMUA_Achr2P18340_001	Banana	plasma membrane	90.15	90.59
PGSC0003DMT400067463	Potato	cytosol	90.15	90.15
KRH40178	Soybean	endoplasmic reticulum	89.66	90.1
KRH66494	Soybean	endoplasmic reticulum	89.16	89.16
Bra024956.1-P	Field mustard	cytosol	88.18	88.61
Bra022113.1-P	Field mustard	cytosol	88.18	88.61
Bra017497.1-P	Field mustard	cytosol	88.18	88.61
AT1G02130.1	Thale cress	cytosol	88.18	88.18
Os02t0653800-01	Rice	plasma membrane	88.18	88.18
Os01t0179700-01	Rice	plasma membrane	88.18	88.18
PGSC0003DMT400041326	Potato	cytosol	87.68	87.68
TraesCS3A01G056600.1	Wheat	cytosol	87.68	87.68
TraesCS3B01G070300.2	Wheat	cytosol	87.68	87.68
TraesCS3D01G056600.1	Wheat	plastid	87.68	87.68
Bra012658.1-P	Field mustard	cytosol	87.19	87.62
EES07529	Sorghum	cytosol	87.19	87.19
TraesCS3D01G056500.1	Wheat	golgi	86.21	86.21
TraesCS3A01G056500.1	Wheat	cytosol	84.73	84.73
HORVU3Hr1G010800.8	Barley	cytosol	66.5	82.82
KRH48822	Soybean	cytosol, endoplasmic reticulum	62.56	80.38
GSMUA_Achr1P04400_001	Banana	endoplasmic reticulum, extracellular, plasma membrane	89.66	80.18
TraesCS3A01G056800.1	Wheat	cytosol	74.38	79.89
CDY38055	Canola	cytosol	88.18	75.53
PGSC0003DMT400064019	Potato	cytosol, extracellular	73.89	74.26
TraesCS3A01G056900.1	Wheat	mitochondrion	56.16	68.26
GSMUA_Achr7P06570_001	Banana	cytosol	88.67	65.45
VIT_15s0021g01410.t01	Wine grape	cytosol	64.53	63.9
Zm00001d051336_P001	Maize	plastid	84.73	63.24
Bra040162.1-P	Field mustard	cytosol	84.73	62.77
HORVU3Hr1G010780.1	Barley	plasma membrane	86.21	62.72
GSMUA_Achr11P...	Banana	endoplasmic reticulum, plastid	91.13	61.46
PGSC0003DMT400040138	Potato	cytosol	62.56	58.8
TraesCS3A01G056700.1	Wheat	cytosol	73.4	58.43
PGSC0003DMT400071317	Potato	cytosol	61.08	57.41
PGSC0003DMT400008917	Potato	cytosol	61.08	57.41
PGSC0003DMT400049296	Potato	cytosol	60.59	56.94
PGSC0003DMT400022823	Potato	cytosol	60.59	56.94
PGSC0003DMT400032908	Potato	cytosol	48.77	46.92
PGSC0003DMT400079822	Potato	cytosol	47.29	45.5
PGSC0003DMT400020113	Potato	cytosol	47.29	45.5
Zm00001d017456_P003	Maize	cytosol	85.22	43.14
PGSC0003DMT400054721	Potato	cytosol	34.48	42.42

Protein Annotations

MapMan:22.8.1.4	Gene3D:3.40.50.300	ProteinID:ABK96799	ProteinID:ABK96799.1	EMBL:EF091876	GO:GO:0000139
GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0003924	GO:GO:0005488	GO:GO:0005525
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005773	GO:GO:0005794
GO:GO:0005886	GO:GO:0006810	GO:GO:0006888	GO:GO:0008150	GO:GO:0016020	GO:GO:0016787
GO:GO:0032588	GO:GO:0046686	UniProt:M1B024	InterPro:P-loop_NTPase	PFAM:PF00071	EnsemblPlantsGene:PGSC0003DMG400013080
PGSC:PGSC0003DMG400013080	EnsemblPlants:PGSC0003DMT400034028	PRINTS:PR00449	PFscan:PS51419	PANTHER:PTHR24073	PANTHER:PTHR24073:SF666
SMART:SM00173	SMART:SM00174	SMART:SM00175	SMART:SM00176	SMART:SM00177	SUPFAM:SSF52540
InterPro:Small_GTP-bd_dom	InterPro:Small_GTPase	TIGRFAMs:TIGR00231	UniParc:UPI000276670F	:	:

Description

GTP-binding protein [Source:PGSC_GENE;Acc:PGSC0003DMG400013080]

Coordinates

chr5:-:49460359..49466079

Molecular Weight (calculated)

22406.4 Da

IEP (calculated)

5.034

GRAVY (calculated)

-0.264

Length

203 amino acids

Sequence
(BLAST)

001: MNPEYDYLFK LLLIGDSGVG KSCLLLRFAD DTYLESYIST IGVDFKIRTV EQDGKTIKLQ IWDTAGQERF RTITSSYYRG AHGIIVVYDV TDQESFNNVK
101: QWLSEIDRYA SDNVNKILVG NKADLTANRV VSYETAKAFA DEIGIPFLET SAKDATNVEQ AFMAMTGAIK NRMASQPASN SAKPPTVNIR GQPVTQSGGC
201: CSS

Best Arabidopsis Sequence Match ( AT1G02130.1 )
(BLAST)

001: MNPEYDYLFK LLLIGDSGVG KSCLLLRFSD DSYVESYIST IGVDFKIRTV EQDGKTIKLQ IWDTAGQERF RTITSSYYRG AHGIIIVYDV TDEESFNNVK
101: QWLSEIDRYA SDNVNKLLVG NKSDLTENRA IPYETAKAFA DEIGIPFMET SAKDATNVEQ AFMAMSASIK ERMASQPAGN NARPPTVQIR GQPVAQKNGC
201: CST

Arabidopsis Description

RABD2ARas-related protein RABD2a [Source:UniProtKB/Swiss-Prot;Acc:P28188]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.