Factsheet for TraesCS3D01G056600.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

cytosol 2
extracellular 2
endoplasmic reticulum 2
vacuole 2
plasma membrane 2
golgi 2
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, nucleus, secretory
MultiLoc:	cytosol
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	nucleus
YLoc:	cytosol

plastid: 16595579
plastid: 22160430
golgi: 23128297

msms PMID: 22160430 doi

AH Kamal, K Cho, S Komatsu, N Uozumi, JS Choi, SH Woo

Department of Crop Science, Chungbuk National University, 410 Seongbong-ro, Heungdeok-gu, Cheongju, Chungbuk, 361-763, Korea.

msms PMID: 16595579 doi

Y Balmer, WH Vensel, FM DuPont, BB Buchanan, WJ Hurkman

Department of Plant and Microbial Biology, University of California, 111 Koshland Hall, Berkeley, CA 94720, USA.

msms, gfp PMID: 23128297 doi

M Suliman, AL Chateigner-Boutin, M Francin-Allami, A Partier, B Bouchet, J Salse, C Pont, J Marion, H Rogniaux, D Tessier, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3A01G056600.1	Wheat	cytosol	100.0	100.0
TraesCS3B01G070300.2	Wheat	cytosol	100.0	100.0
HORVU3Hr1G010800.8	Barley	cytosol	77.83	96.93
TraesCS3D01G056500.1	Wheat	golgi	96.55	96.55
TraesCS3A01G056800.1	Wheat	cytosol	86.7	93.12
Os02t0653800-01	Rice	plasma membrane	92.61	92.61
Os01t0179700-01	Rice	plasma membrane	92.61	92.61
EES07529	Sorghum	cytosol	92.61	92.61
GSMUA_Achr2P18340_001	Banana	plasma membrane	91.63	92.08
VIT_00s1372g00020.t01	Wine grape	cytosol	89.16	91.41
GSMUA_Achr8P15030_001	Banana	cytosol	90.64	90.64
KRH01059	Soybean	endoplasmic reticulum	90.15	90.59
KRH57496	Soybean	endoplasmic reticulum	90.15	90.59
KRH04201	Soybean	cytosol, extracellular	89.66	90.1
VIT_16s0013g00520.t01	Wine grape	extracellular	89.66	89.66
Solyc08g078070.2.1	Tomato	nucleus	89.66	89.66
KRH66494	Soybean	endoplasmic reticulum	89.66	89.66
KRH40178	Soybean	endoplasmic reticulum	89.16	89.6
PGSC0003DMT400067463	Potato	cytosol	89.16	89.16
GSMUA_Achr11P...	Banana	cytosol	89.16	89.16
AT1G02130.1	Thale cress	cytosol	89.16	89.16
Solyc05g052070.2.1	Tomato	unclear	88.67	88.67
Solyc05g053940.2.1	Tomato	nucleus, plastid, unclear	87.68	87.68
PGSC0003DMT400034028	Potato	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	87.68	87.68
PGSC0003DMT400041326	Potato	cytosol	87.68	87.68
Bra012658.1-P	Field mustard	cytosol	86.21	86.63
Bra017497.1-P	Field mustard	cytosol	86.21	86.63
Bra022113.1-P	Field mustard	cytosol	86.21	86.63
Bra024956.1-P	Field mustard	cytosol	86.21	86.63
Solyc01g090170.2.1	Tomato	unclear	83.25	83.25
GSMUA_Achr1P04400_001	Banana	endoplasmic reticulum, extracellular, plasma membrane	90.64	81.06
KRH48822	Soybean	cytosol, endoplasmic reticulum	62.07	79.75
TraesCS3A01G056900.1	Wheat	mitochondrion	64.53	78.44
TraesCS3D01G206600.1	Wheat	cytosol	84.73	77.83
CDY38055	Canola	cytosol	88.67	75.95
TraesCS1D01G013200.1	Wheat	cytosol, extracellular	72.91	72.55
Zm00001d051336_P001	Maize	plastid	90.64	67.65
TraesCS2D01G309200.2	Wheat	cytosol	70.44	67.14
GSMUA_Achr7P06570_001	Banana	cytosol	88.67	65.45
VIT_15s0021g01410.t01	Wine grape	cytosol	63.05	62.44
Bra040162.1-P	Field mustard	cytosol	84.24	62.41
GSMUA_Achr11P...	Banana	endoplasmic reticulum, plastid	90.15	60.8
TraesCS1D01G285200.1	Wheat	cytosol	58.62	55.61
TraesCS5D01G489700.1	Wheat	cytosol	58.13	55.14
TraesCS3D01G350000.3	Wheat	cytosol	60.1	51.26
Zm00001d017456_P003	Maize	cytosol	90.64	45.89
TraesCS6D01G188500.1	Wheat	golgi	46.31	44.76
TraesCS2D01G331300.1	Wheat	golgi, plastid	45.81	44.29
TraesCS5D01G264100.1	Wheat	cytosol	41.87	40.09
TraesCS3D01G495900.1	Wheat	cytosol	33.5	37.99

Protein Annotations

MapMan:22.8.1.4	Gene3D:3.40.50.300	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0003924
GO:GO:0005488	GO:GO:0005525	GO:GO:0016787	InterPro:P-loop_NTPase	PFAM:PF00071	PRINTS:PR00449
PFscan:PS51419	PANTHER:PTHR24073	PANTHER:PTHR24073:SF666	SMART:SM00173	SMART:SM00174	SMART:SM00175
SMART:SM00176	SUPFAM:SSF52540	InterPro:Small_GTP-bd_dom	InterPro:Small_GTPase	TIGRFAMs:TIGR00231	EnsemblPlantsGene:TraesCS3D01G056600
EnsemblPlants:TraesCS3D01G056600.1	TIGR:cd01869	:	:	:	:

Description

No Description!

Coordinates

chr3D:+:23673263..23676644

Molecular Weight (calculated)

22714.9 Da

IEP (calculated)

5.072

GRAVY (calculated)

-0.329

Length

203 amino acids

Sequence
(BLAST)

001: MNPEYDYLFK LLLIGDSGVG KSCLLLRFAD DSYLESYIST IGVDFKIRTV EQDGKTMKLQ IWDTAGQERF RTITSSYYRG AHGIIIVYDV TDQDSFNNVK
101: QWLNEIDRYA SENVNKLLVG NKSDLTDKRV VSYETAKAFA DEIGIPFMET SAKNALNVEQ AFMAMSASIK DRMASQPAAN SARPATVQIR GQPVEQKTSC
201: CSS

Best Arabidopsis Sequence Match ( AT1G02130.1 )
(BLAST)

001: MNPEYDYLFK LLLIGDSGVG KSCLLLRFSD DSYVESYIST IGVDFKIRTV EQDGKTIKLQ IWDTAGQERF RTITSSYYRG AHGIIIVYDV TDEESFNNVK
101: QWLSEIDRYA SDNVNKLLVG NKSDLTENRA IPYETAKAFA DEIGIPFMET SAKDATNVEQ AFMAMSASIK ERMASQPAGN NARPPTVQIR GQPVAQKNGC
201: CST

Arabidopsis Description

RABD2ARas-related protein RABD2a [Source:UniProtKB/Swiss-Prot;Acc:P28188]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.