Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- mitochondrion 2
- cytosol 3
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5B01G255300.1 | Wheat | cytosol | 83.96 | 95.19 |
| TraesCS5A01G256000.1 | Wheat | cytosol | 85.38 | 88.29 |
| HORVU5Hr1G071600.3 | Barley | cytosol | 81.6 | 80.47 |
| TraesCS2D01G331300.1 | Wheat | golgi, plastid | 64.15 | 64.76 |
| TraesCS6D01G188500.1 | Wheat | golgi | 63.21 | 63.81 |
| Solyc07g056150.2.1 | Tomato | cytosol, nucleus | 62.74 | 62.74 |
| PGSC0003DMT400054721 | Potato | cytosol | 47.17 | 60.61 |
| VIT_00s1506g00010.t01 | Wine grape | cytosol | 40.09 | 57.05 |
| TraesCS3D01G495900.1 | Wheat | cytosol | 47.64 | 56.42 |
| Os10t0208200-00 | Rice | cytosol | 53.77 | 53.77 |
| GSMUA_Achr4P01720_001 | Banana | endoplasmic reticulum, extracellular | 61.79 | 52.4 |
| TraesCS3D01G056500.1 | Wheat | golgi | 40.57 | 42.36 |
| TraesCS3D01G056600.1 | Wheat | plastid | 40.09 | 41.87 |
| TraesCS1D01G013200.1 | Wheat | cytosol, extracellular | 39.15 | 40.69 |
| TraesCS2D01G309200.2 | Wheat | cytosol | 39.15 | 38.97 |
| TraesCS3D01G206600.1 | Wheat | cytosol | 39.62 | 38.01 |
| TraesCS5D01G489700.1 | Wheat | cytosol | 34.91 | 34.58 |
| TraesCS1D01G285200.1 | Wheat | cytosol | 34.43 | 34.11 |
| TraesCS3D01G350000.3 | Wheat | cytosol | 34.43 | 30.67 |
Protein Annotations
| MapMan:22.8.1.2 | Gene3D:3.40.50.300 | GO:GO:0000166 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0003924 |
| GO:GO:0005488 | GO:GO:0005525 | GO:GO:0016787 | InterPro:P-loop_NTPase | PFAM:PF00071 | PRINTS:PR00449 |
| PFscan:PS51419 | PANTHER:PTHR24073 | PANTHER:PTHR24073:SF843 | SMART:SM00173 | SMART:SM00174 | SMART:SM00175 |
| SMART:SM00176 | SUPFAM:SSF52540 | InterPro:Small_GTP-bd_dom | InterPro:Small_GTPase | TIGRFAMs:TIGR00231 | TMHMM:TMhelix |
| EnsemblPlantsGene:TraesCS5D01G264100 | EnsemblPlants:TraesCS5D01G264100.1 | : | : | : | : |
Description
No Description!
Coordinates
chr5D:+:369303132..369304424
Molecular Weight (calculated)
23786.6 Da
IEP (calculated)
8.208
GRAVY (calculated)
-0.080
Length
212 amino acids
Sequence
(BLAST)
(BLAST)
001: MSFAYKFRYI VVGDTGVGKS CLLLQFTDKR FQPVHDLTIG VEFGQRMVTI GKKKIKLQIW DTAGQEAFRS ITKSYYRSAA AALLVYDITR RETFNHVASW
101: LEEMREQADG NNNITIMLVG NKSDLAQRRA VSTEEGEQFA KENGLAFMET SARTRHNVEE AFPQSSSMVC QKIQEGAIDL SKVSAVLHYV VLYFLLAGAY
201: GVHLTIVVSL AE
101: LEEMREQADG NNNITIMLVG NKSDLAQRRA VSTEEGEQFA KENGLAFMET SARTRHNVEE AFPQSSSMVC QKIQEGAIDL SKVSAVLHYV VLYFLLAGAY
201: GVHLTIVVSL AE
001: MSYAYRFKYI IIGDTGVGKS CLLLKFTDKR FQAVHDLTIG VEFGAKTITI DNKPIKLQIW DTAGQESFRS VTRSYYRGRA GTLLVYDITR RETFNHLASW
101: LEEARQHASE NMTTMLIGNK CDLEDKRTVS TEEGEQFARE HGLIFMEASA KTAHNVEEAF VETAATIYKR IQDGVVDEAN EPGITPGPFG GKDASSSQQR
201: RGCCG
101: LEEARQHASE NMTTMLIGNK CDLEDKRTVS TEEGEQFARE HGLIFMEASA KTAHNVEEAF VETAATIYKR IQDGVVDEAN EPGITPGPFG GKDASSSQQR
201: RGCCG
Arabidopsis Description
RABB1ARABB1a [Source:UniProtKB/TrEMBL;Acc:A0A178UXW9]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.