Factsheet for GSMUA_Achr4P01720_001

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, extracellular

Predictor Summary:

nucleus 1
cytosol 2
extracellular 5
endoplasmic reticulum 6
vacuole 4
plasma membrane 4
golgi 5

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum, extracellular
Any Predictor:	cytosol, nucleus, secretory
BaCelLo:	nucleus
EpiLoc:	cytosol
iPSORT:	secretory
MultiLoc:	cytosol
Plant-mPloc:	endoplasmic reticulum, golgi
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	extracellular
YLoc:	endoplasmic reticulum

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_00s1506g00010.t01	Wine grape	cytosol	56.8	95.3
PGSC0003DMT400054721	Potato	cytosol	62.8	95.15
GSMUA_Achr3P04210_001	Banana	cytosol	77.6	91.94
GSMUA_Achr9P27910_001	Banana	plasma membrane	76.8	91.0
Solyc07g056150.2.1	Tomato	cytosol, nucleus	75.6	89.15
GSMUA_Achr10P...	Banana	endoplasmic reticulum, extracellular, vacuole	43.6	78.42
TraesCS5B01G255300.1	Wheat	cytosol	52.0	69.52
GSMUA_Achr4P09730_001	Banana	cytosol	58.4	69.19
GSMUA_Achr8P25750_001	Banana	cytosol	58.0	65.61
TraesCS5A01G256000.1	Wheat	cytosol	53.6	65.37
Os10t0208200-00	Rice	cytosol	54.4	64.15
TraesCS5D01G264100.1	Wheat	cytosol	52.4	61.79
HORVU5Hr1G071600.3	Barley	cytosol	52.0	60.47
TraesCS2B01G542700.1	Wheat	cytosol	41.2	46.82
GSMUA_Achr7P24260_001	Banana	cytosol	36.8	45.54
GSMUA_Achr3P32240_001	Banana	cytosol	36.0	44.55
GSMUA_Achr2P18340_001	Banana	plasma membrane	35.6	44.06
GSMUA_Achr8P15030_001	Banana	cytosol	35.6	43.84
GSMUA_Achr11P...	Banana	cytosol	35.6	43.84
GSMUA_Achr10P...	Banana	cytosol	33.2	41.09
GSMUA_Achr1P04400_001	Banana	endoplasmic reticulum, extracellular, plasma membrane	36.4	40.09
GSMUA_Achr10P...	Banana	cytosol	34.0	39.35
GSMUA_Achr11P...	Banana	cytosol	33.6	38.89
GSMUA_Achr6P34270_001	Banana	cytosol	33.2	38.43
GSMUA_Achr9P03220_001	Banana	cytosol	33.2	38.43
GSMUA_Achr10P...	Banana	cytosol	33.2	38.43
GSMUA_Achr8P02620_001	Banana	cytosol	32.8	37.96
GSMUA_AchrUn_...	Banana	cytosol	32.8	37.96
GSMUA_Achr6P17450_001	Banana	cytosol	34.4	34.13
GSMUA_Achr7P06570_001	Banana	cytosol	36.0	32.73
GSMUA_Achr11P...	Banana	endoplasmic reticulum, plastid	36.0	29.9

Protein Annotations

MapMan:22.8.1.2	Gene3D:3.40.50.300	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0003924
GO:GO:0005488	GO:GO:0005525	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021	GO:GO:0016787
EnsemblPlantsGene:GSMUA_Achr4G01720_001	EnsemblPlants:GSMUA_Achr4P01720_001	EnsemblPlants:GSMUA_Achr4T01720_001	UniProt:M0SK89	InterPro:P-loop_NTPase	PFAM:PF00071
PRINTS:PR00449	PFscan:PS51419	PANTHER:PTHR24073	PANTHER:PTHR24073:SF597	SMART:SM00173	SMART:SM00174
SMART:SM00175	SMART:SM00176	SUPFAM:SSF52540	InterPro:Small_GTP-bd_dom	InterPro:Small_GTPase	TIGRFAMs:TIGR00231
TMHMM:TMhelix	UniParc:UPI000295AE3E	SEG:seg	:	:	:

Description

Ras-related protein Rab-2-B [Source:GMGC_GENE;Acc:GSMUA_Achr4G01720_001]

Coordinates

chr4:-:1431437..1434862

Molecular Weight (calculated)

27736.6 Da

IEP (calculated)

7.895

GRAVY (calculated)

0.119

Length

250 amino acids

Sequence
(BLAST)

001: MQIYNLIYAV LPANILVINL HIFLLFPIVK FVYGSFLCSF FTVSMFLLTY LLGFGVGKSC LLLQFTDKRF QPVHDLTIGV EFGARMITID NKPIKLQIWD
101: TAGQESFRSI TRSYYRGAAG ALLVYDITRR ETFNHLASWL EDARQHANPN MTIMLIGNKC DLAHRRAVST EEGEQFAKEH GLIFMEASAK TAQNVEEAFI
201: KTAAMIYKKI QDGVFDVSNE SYGIKVGYGG IPGPSGGRDG SSSQAGGCCS

Best Arabidopsis Sequence Match ( AT4G17170.1 )
(BLAST)

001: MSYAYLFKYI IIGDTGVGKS CLLLQFTDKR FQPVHDLTIG VEFGARMITI DNKPIKLQIW DTAGQESFRS ITRSYYRGAA GALLVYDITR RETFNHLASW
101: LEDARQHANA NMTIMLIGNK CDLAHRRAVS TEEGEQFAKE HGLIFMEASA KTAQNVEEAF IKTAATIYKK IQDGVFDVSN ESYGIKVGYG GIPGPSGGRD
201: GSTSQGGGCC G

Arabidopsis Description

RABB1CRABB1C [Source:UniProtKB/TrEMBL;Acc:A0A178V4V1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.