Factsheet for VIT_00s1506g00010.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
endoplasmic reticulum 1
golgi 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400054721	Potato	cytosol	94.63	85.45
VIT_12s0057g01470.t01	Wine grape	extracellular	93.96	66.35
Solyc07g056150.2.1	Tomato	cytosol, nucleus	93.96	66.04
VIT_14s0066g00180.t01	Wine grape	cytosol	85.23	60.77
GSMUA_Achr4P01720_001	Banana	endoplasmic reticulum, extracellular	95.3	56.8
VIT_00s0455g00010.t01	Wine grape	cytosol	46.98	52.63
Os10t0208200-00	Rice	cytosol	65.77	46.23
TraesCS5B01G255300.1	Wheat	cytosol	56.38	44.92
TraesCS5A01G256000.1	Wheat	cytosol	59.06	42.93
TraesCS5D01G264100.1	Wheat	cytosol	57.05	40.09
HORVU5Hr1G071600.3	Barley	cytosol	57.72	40.0
TraesCS2B01G542700.1	Wheat	cytosol	50.34	34.09
VIT_00s1372g00020.t01	Wine grape	cytosol	40.94	30.81
VIT_16s0013g00520.t01	Wine grape	extracellular	40.94	30.05
VIT_12s0035g01150.t01	Wine grape	vacuole	38.93	28.71
VIT_00s0878g00030.t01	Wine grape	cytosol	19.46	28.43
VIT_15s0021g01410.t01	Wine grape	cytosol	35.57	25.85
VIT_13s0019g00520.t01	Wine grape	extracellular	36.91	25.46
VIT_06s0004g04200.t01	Wine grape	cytosol	36.24	25.0
VIT_08s0007g04750.t01	Wine grape	cytosol	34.9	24.07
VIT_08s0040g02490.t01	Wine grape	cytosol	33.56	23.15

Protein Annotations

EntrezGene:100243270	wikigene:100243270	EntrezGene:100854589	wikigene:100854589	Gene3D:3.40.50.300	MapMan:35.1
ProteinID:CBI38522	ProteinID:CBI38522.3	UniProt:D7U704	EMBL:FN596616	GO:GO:0000166	GO:GO:0003674
GO:GO:0003824	GO:GO:0003924	GO:GO:0005488	GO:GO:0005525	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005768	GO:GO:0006810	GO:GO:0008150	GO:GO:0009987
GO:GO:0016043	GO:GO:0016787	GO:GO:0030100	EntrezGene:LOC100243270	wikigene:LOC100243270	EntrezGene:LOC100854589
wikigene:LOC100854589	InterPro:P-loop_NTPase	PFAM:PF00071	PRINTS:PR00449	PFscan:PS51419	PANTHER:PTHR24073
PANTHER:PTHR24073:SF597	SMART:SM00173	SMART:SM00174	SMART:SM00175	SUPFAM:SSF52540	InterPro:Small_GTP-bd_dom
InterPro:Small_GTPase	TIGR:TC54024	TIGRFAMs:TIGR00231	UniParc:UPI0001BE4C65	ArrayExpress:VIT_00s1506g00010	EnsemblPlantsGene:VIT_00s1506g00010
EnsemblPlants:VIT_00s1506g00010.t01	unigene:Vvi.9030	RefSeq:XP_003635353	RefSeq:XP_003635353.1	RefSeq:XP_003635585	RefSeq:XP_003635585.1
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chrUn:-:39382474..39384753

Molecular Weight (calculated)

16029.7 Da

IEP (calculated)

6.774

GRAVY (calculated)

-0.424

Length

149 amino acids

Sequence
(BLAST)

001: AGQESFRSIT RSYYRGAAGA LLVYDITRRE TFNHLASWLE DARQHANANM SIMLIGNKCD LAHRRAVSTE EGEQFAKENG LIFMEASAKT AQNVEEAFVK
101: TAATIYKKIQ DGVFDVSNES QGIKVGYGGI PGPSGGRDGS SSQAGGCCN

Best Arabidopsis Sequence Match ( AT4G17170.1 )
(BLAST)

001: MSYAYLFKYI IIGDTGVGKS CLLLQFTDKR FQPVHDLTIG VEFGARMITI DNKPIKLQIW DTAGQESFRS ITRSYYRGAA GALLVYDITR RETFNHLASW
101: LEDARQHANA NMTIMLIGNK CDLAHRRAVS TEEGEQFAKE HGLIFMEASA KTAQNVEEAF IKTAATIYKK IQDGVFDVSN ESYGIKVGYG GIPGPSGGRD
201: GSTSQGGGCC G

Arabidopsis Description

RABB1CRABB1C [Source:UniProtKB/TrEMBL;Acc:A0A178V4V1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.