Factsheet for VIT_13s0019g00520.t01

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

nucleus 2
cytosol 4
mitochondrion 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	cytosol, mitochondrion, nucleus, secretory
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	nucleus
Predotar:	secretory
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

extracellular: 27664331

msms PMID: 27664331 doi

P Pérez-Bermúdez, J Blesa, JM Soriano, A Marcilla

Departament de Biologia Vegetal, Facultat de Farmàcia, Universitat de València, Burjassot, Valencia, Spain., Grupo de Ciencias de la Alimentación Basada en la Evidencia y Experimentación (CiAlBEx), Instituto de Ciencias de los Materiales, Parque Científico, Universitat de València, Paterna, Spain; Unidad Mixta de Investigación en Endocrinología, Nutrición y Dietética Clínica, Instituto de Investigación Sanitaria La Fe-Universitat de València, Valencia, Spain., Unidad Mixta de Investigación en Endocrinología, Nutrición y Dietética Clínica, Instituto de Investigación Sanitaria La Fe-Universitat de València, Valencia, Spain; Àrea de Parasitologia, Departament de Farmàcia i Tecnologia Farmacèutica i Parasitologia, Universitat de València, Burjassot, Valencia, Spain. Electronic address: antonio.marcilla@uv.es.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH70501	Soybean	endoplasmic reticulum	96.3	96.3
KRH01606	Soybean	endoplasmic reticulum	95.83	95.83
KRH36193	Soybean	endoplasmic reticulum, extracellular	95.37	95.37
VIT_06s0004g04200.t01	Wine grape	cytosol	94.44	94.44
KRG90563	Soybean	cytosol	94.44	94.44
VIT_08s0040g02490.t01	Wine grape	cytosol	93.98	93.98
PGSC0003DMT400071317	Potato	cytosol	93.98	93.98
Solyc04g011360.2.1	Tomato	plastid	93.52	93.52
GSMUA_Achr10P...	Banana	cytosol	93.06	93.06
GSMUA_Achr11P...	Banana	cytosol	93.06	93.06
GSMUA_Achr6P34270_001	Banana	cytosol	93.06	93.06
GSMUA_Achr9P03220_001	Banana	cytosol	93.06	93.06
GSMUA_AchrUn_...	Banana	cytosol	93.06	93.06
Os07t0239400-01	Rice	plasma membrane	92.59	93.02
Zm00001d010538_P005	Maize	cytosol	92.13	92.56
Zm00001d038380_P001	Maize	extracellular, plasma membrane	92.13	92.56
EES19652	Sorghum	cytosol	92.13	92.56
EER93195	Sorghum	cytosol	91.67	92.52
Os05t0461300-01	Rice	plastid	92.13	92.13
Os03t0819900-01	Rice	plasma membrane	91.2	92.06
GSMUA_Achr10P...	Banana	cytosol	91.67	91.67
Zm00001d034638_P001	Maize	cytosol	90.74	91.16
GSMUA_Achr8P02620_001	Banana	cytosol	90.74	90.74
TraesCS1A01G286200.1	Wheat	cytosol	89.81	90.65
TraesCS1B01G295600.1	Wheat	cytosol	89.81	90.65
TraesCS1D01G285200.1	Wheat	cytosol	89.81	90.65
TraesCS3A01G356000.3	Wheat	plastid	90.28	90.28
VIT_08s0007g04750.t01	Wine grape	cytosol	90.28	90.28
TraesCS3B01G388900.1	Wheat	cytosol	89.81	89.81
TraesCS5B01G489300.1	Wheat	golgi	88.43	89.25
TraesCS5A01G476400.1	Wheat	cytosol	87.96	88.78
TraesCS5D01G489700.1	Wheat	cytosol	87.5	88.32
OQU88745	Sorghum	cytosol	91.2	87.17
HORVU1Hr1G072070.1	Barley	cytosol	86.57	83.11
TraesCS3D01G350000.3	Wheat	cytosol	89.81	81.51
HORVU5Hr1G112790.2	Barley	cytosol, extracellular	81.94	68.34
HORVU3Hr1G086830.7	Barley	cytosol	77.31	63.02
VIT_00s1372g00020.t01	Wine grape	cytosol	57.41	62.63
VIT_16s0013g00520.t01	Wine grape	extracellular	57.87	61.58
VIT_12s0035g01150.t01	Wine grape	vacuole	55.09	58.91
VIT_00s0878g00030.t01	Wine grape	cytosol	26.39	55.88
VIT_15s0021g01410.t01	Wine grape	cytosol	44.44	46.83
VIT_12s0057g01470.t01	Wine grape	extracellular	42.59	43.6
VIT_14s0066g00180.t01	Wine grape	cytosol	42.13	43.54
VIT_00s1506g00010.t01	Wine grape	cytosol	25.46	36.91
VIT_00s0455g00010.t01	Wine grape	cytosol	12.96	21.05

Protein Annotations

EntrezGene:100252992	wikigene:100252992	MapMan:22.8.1.5	Gene3D:3.40.50.300	ProteinID:CBI31714	ProteinID:CBI31714.3
UniProt:D7TLX7	EMBL:FN595998	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0003924
GO:GO:0005488	GO:GO:0005525	GO:GO:0006810	GO:GO:0006904	GO:GO:0008150	GO:GO:0009306
GO:GO:0009987	GO:GO:0016787	GO:GO:0017157	EntrezGene:LOC100252992	wikigene:LOC100252992	InterPro:P-loop_NTPase
PFAM:PF00071	PRINTS:PR00449	PFscan:PS51419	PANTHER:PTHR24073	PANTHER:PTHR24073:SF826	SMART:SM00173
SMART:SM00174	SMART:SM00175	SMART:SM00176	SMART:SM00177	SUPFAM:SSF52540	InterPro:Small_GTP-bd_dom
InterPro:Small_GTPase	TIGRFAMs:TIGR00231	UniParc:UPI00015C9C5A	ArrayExpress:VIT_13s0019g00520	EnsemblPlantsGene:VIT_13s0019g00520	EnsemblPlants:VIT_13s0019g00520.t01
RefSeq:XP_002284071	RefSeq:XP_002284071.1	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr13:-:2535642..2539744

Molecular Weight (calculated)

23899.4 Da

IEP (calculated)

8.021

GRAVY (calculated)

-0.352

Length

216 amino acids

Sequence
(BLAST)

001: MAAPPARARA DYDYLIKLLL IGDSGVGKSC LLLRFSDGSF TTSFITTIGI DFKIRTIELD GKRIKLQIWD TAGQERFRTI TTAYYRGAMG ILLVYDVTDE
101: SSFNNIRNWI RNIEQHASDN VNKVLVGNKA DMDESKRAVP TSKGQALADE YGIKFFETSA KTNLNVEEVF FSIAKDIKQR LAETDSKAEP QTIKINQPDQ
201: AANGGQAPQK SACCGS

Best Arabidopsis Sequence Match ( AT5G59840.1 )
(BLAST)

001: MAAPPARARA DYDYLIKLLL IGDSGVGKSC LLLRFSDGSF TTSFITTIGI DFKIRTIELD GKRIKLQIWD TAGQERFRTI TTAYYRGAMG ILLVYDVTDE
101: SSFNNIRNWI RNIEQHASDN VNKILVGNKA DMDESKRAVP KSKGQALADE YGIKFFETSA KTNLNVEEVF FSIAKDIKQR LADTDSRAEP ATIKISQTDQ
201: AAGAGQATQK SACCGS

Arabidopsis Description

Putative GTP-binding protein ara-3 [Source:UniProtKB/TrEMBL;Acc:Q9FJF1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.