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Barley
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Barley
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • plastid 2
  • cytosol 2
Predictors GFP MS/MS Papers
Winner Takes All:cytosol
Any Predictor:cytosol, plastid
iPSORT:plastid
MultiLoc:cytosol
TargetP:plastid
YLoc:cytosol
PPI

Inferred distinct locusB in Crop

locusBlocations
HORVU1Hr1G028520.1
HORVU3Hr1G018940.2
HORVU3Hr1G038200.3
HORVU3Hr1G082800.3 peroxisome
HORVU7Hr1G002080.2

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT3G46060.1 HORVU3Hr1G082800.3 AT1G29260.1 23297417
AT3G46060.1 HORVU3Hr1G038200.3 AT3G06540.1 21798944
AT3G46060.1 HORVU1Hr1G028520.1 AT3G13720.1 21798944
AT3G46060.1 HORVU3Hr1G018940.2 AT3G13720.1 21798944
AT3G46060.1 HORVU7Hr1G002080.2 AT4G25660.1 21798944
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
TraesCS3B01G388900.1 Wheat cytosol 69.81 85.65
TraesCS3A01G356000.3 Wheat plastid 69.43 85.19
GSMUA_Achr9P03220_001 Banana cytosol 65.66 80.56
GSMUA_Achr10P... Banana cytosol 65.28 80.09
GSMUA_Achr6P34270_001 Banana cytosol 64.91 79.63
GSMUA_Achr11P... Banana cytosol 64.91 79.63
Solyc11g073050.1.1 Tomato endoplasmic reticulum 64.53 79.17
PGSC0003DMT400040138 Potato cytosol 64.15 78.7
GSMUA_AchrUn_... Banana cytosol 63.77 78.24
KRH29838 Soybean endoplasmic reticulum 63.02 78.04
Bra019475.1-P Field mustard cytosol 63.4 77.78
GSMUA_Achr8P02620_001 Banana cytosol 63.4 77.78
TraesCS3D01G350000.3 Wheat cytosol 69.81 77.73
KRH24835 Soybean cytosol 62.64 77.57
VIT_13s0019g00520.t01 Wine grape extracellular 63.02 77.31
CDY30926 Canola cytosol 63.02 77.31
KRH01606 Soybean endoplasmic reticulum 62.64 76.85
KRH70501 Soybean endoplasmic reticulum 62.64 76.85
VIT_08s0040g02490.t01 Wine grape cytosol 62.64 76.85
AT3G46060.1 Thale cress cytosol 62.64 76.85
CDY72056 Canola cytosol 36.23 76.8
AT5G59840.1 Thale cress cytosol 62.26 76.39
KRH36193 Soybean endoplasmic reticulum, extracellular 62.26 76.39
VIT_06s0004g04200.t01 Wine grape cytosol 62.26 76.39
CDX68365 Canola cytosol 62.26 76.39
CDX77855 Canola cytosol 62.26 76.39
Bra002527.1-P Field mustard cytosol 62.26 76.39
CDX86045 Canola cytosol 62.26 76.39
PGSC0003DMT400022823 Potato cytosol 62.26 76.39
CDY71506 Canola cytosol 62.26 76.39
PGSC0003DMT400049296 Potato cytosol 62.26 76.39
CDY31592 Canola cytosol 62.26 76.39
Solyc06g005350.2.1 Tomato cytosol 41.51 76.39
Solyc09g010370.2.1 Tomato extracellular, plastid 62.26 76.39
KRH23030 Soybean endoplasmic reticulum 61.89 76.28
KRH10292 Soybean cytosol 61.89 76.28
GSMUA_Achr10P... Banana cytosol 61.89 75.93
KRG90563 Soybean cytosol 61.89 75.93
PGSC0003DMT400008917 Potato cytosol 61.51 75.46
PGSC0003DMT400071317 Potato cytosol 61.51 75.46
AT3G53610.3 Thale cress cytosol 61.13 75.0
Bra006690.1-P Field mustard cytosol 61.13 75.0
Solyc04g011360.2.1 Tomato plastid 61.13 75.0
Solyc10g086350.1.1 Tomato cytosol, nucleus 61.13 75.0
CDX80224 Canola cytosol 60.0 74.65
CDX88725 Canola cytosol 60.75 74.54
CDX88726 Canola cytosol 60.75 74.54
Bra033830.1-P Field mustard cytosol 53.58 73.58
CDY34032 Canola cytosol 40.75 73.47
HORVU1Hr1G072070.1 Barley cytosol 61.89 72.89
Bra020282.1-P Field mustard cytosol 58.87 72.22
CDY09249 Canola cytosol 58.49 71.76
CDY70243 Canola cytosol 40.75 71.05
CDX94925 Canola cytosol 40.38 65.24
HORVU5Hr1G112790.2 Barley cytosol, extracellular 61.51 62.93
CDY07577 Canola cytosol 61.89 61.42
Bra003149.1-P Field mustard cytosol 61.51 60.59
CDY52746 Canola cytosol 61.51 60.59
CDX99131 Canola cytosol 63.02 54.22
HORVU3Hr1G010800.8 Barley cytosol 33.21 53.99
HORVU3Hr1G048090.1 Barley plasma membrane 38.87 50.74
Bra038265.1-P Field mustard cytosol 63.02 44.41
HORVU1Hr1G001910.9 Barley endoplasmic reticulum 35.47 41.78
HORVU3Hr1G010780.1 Barley plasma membrane 40.0 37.99
HORVU6Hr1G051470.1 Barley cytosol 28.68 36.19
HORVU5Hr1G071600.3 Barley cytosol 23.02 28.37
Protein Annotations
MapMan:22.8.1.5Gene3D:3.40.50.300UniProt:A0A287M3I2GO:GO:0000166GO:GO:0003674GO:GO:0003824
GO:GO:0003924GO:GO:0005488GO:GO:0005525GO:GO:0016787EnsemblPlantsGene:HORVU3Hr1G086830EnsemblPlants:HORVU3Hr1G086830.7
InterPro:P-loop_NTPasePFAM:PF00071PRINTS:PR00449PFscan:PS51419PANTHER:PTHR24073PANTHER:PTHR24073:SF646
SMART:SM00173SMART:SM00174SMART:SM00175SMART:SM00176SUPFAM:SSF52540InterPro:Small_GTP-bd_dom
InterPro:Small_GTPaseTIGRFAMs:TIGR00231UniParc:UPI000B46CF2DSEG:seg::
Description
No Description!
Coordinates
chrchr3H:+:619130759..619133856
Molecular Weight (calculated)
29266.7 Da
IEP (calculated)
10.486
GRAVY (calculated)
-0.472
Length
265 amino acids
Sequence
(BLAST)
001: PRPRPRPRPR SDSIPRIGRY QFGAPPRSAD VFPIVPPLIA PLSPLSPALP PVRIGAGGAR WPRRRLGPAP TTTTSSSSSS SATAVLARVA SSFTTSFITT
101: IGIDFKIRTI ELDGKRIKLQ IWDTAGQERF RTITTAYYRG AMGILLVYDV TDESSFNNIR NWIRNIEQHA SDNVNKILIG NKADMDESKR AVSTAKGQAL
201: ADEYGIQFFE TSAKTNLNVE QVFFSIARDI KQRLAETDSK PEDRTIKINK TEGSENPESQ KSACC
Best Arabidopsis Sequence Match ( AT3G46060.1 )
(BLAST)
001: MAAPPARARA DYDYLIKLLL IGDSGVGKSC LLLRFSDGSF TTSFITTIGI DFKIRTIELD GKRIKLQIWD TAGQERFRTI TTAYYRGAMG ILLVYDVTDE
101: SSFNNIRNWI RNIEQHASDN VNKILVGNKA DMDESKRAVP TAKGQALADE YGIKFFETSA KTNLNVEEVF FSIGRDIKQR LSDTDSRAEP ATIKISQTDQ
201: AAGAGQATQK SACCGT
Arabidopsis Description
RABE1CRABE1c [Source:UniProtKB/TrEMBL;Acc:A0A178VAR9]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.