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Thale cress
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Thale cress
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • nucleus 1
  • cytosol 3
  • mitochondrion 1
  • extracellular 1
  • endoplasmic reticulum 1
  • vacuole 1
  • plasma membrane 1
  • golgi 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol
Any Predictor:cytosol, nucleus, secretory
BaCelLo:nucleus
MultiLoc:cytosol
Predotar:secretory
PProwler:mitochondrion
WoLF PSORT:cytosol
YLoc:cytosol
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY30926 Canola cytosol 99.07 99.07
CDY71506 Canola cytosol 98.61 98.61
CDX86045 Canola cytosol 98.61 98.61
CDX68365 Canola cytosol 98.61 98.61
Bra019475.1-P Field mustard cytosol 98.15 98.15
CDX77855 Canola cytosol 97.69 97.69
AT5G59840.1 Thale cress cytosol 97.22 97.22
Bra033830.1-P Field mustard cytosol 86.57 96.89
KRH29838 Soybean endoplasmic reticulum 94.44 95.33
Solyc06g005350.2.1 Tomato cytosol 63.43 95.14
KRH24835 Soybean cytosol 93.98 94.86
VIT_06s0004g04200.t01 Wine grape cytosol 93.98 93.98
AT3G53610.3 Thale cress cytosol 93.52 93.52
PGSC0003DMT400040138 Potato cytosol 93.52 93.52
KRH10292 Soybean cytosol 92.59 93.02
Solyc11g073050.1.1 Tomato endoplasmic reticulum 92.59 92.59
KRH23030 Soybean endoplasmic reticulum 92.13 92.56
PGSC0003DMT400008917 Potato cytosol 91.67 91.67
Os05t0461300-01 Rice plastid 91.2 91.2
GSMUA_Achr10P... Banana cytosol 91.2 91.2
GSMUA_Achr11P... Banana cytosol 91.2 91.2
GSMUA_Achr6P34270_001 Banana cytosol 91.2 91.2
GSMUA_Achr9P03220_001 Banana cytosol 91.2 91.2
Os03t0819900-01 Rice plasma membrane 90.28 91.12
Zm00001d010538_P005 Maize cytosol 90.28 90.7
EES19652 Sorghum cytosol 90.28 90.7
Zm00001d034638_P001 Maize cytosol 90.28 90.7
Zm00001d038380_P001 Maize extracellular, plasma membrane 90.28 90.7
EER93195 Sorghum cytosol 89.81 90.65
Os07t0239400-01 Rice plasma membrane 89.81 90.23
GSMUA_AchrUn_... Banana cytosol 89.35 89.35
TraesCS1D01G285200.1 Wheat cytosol 88.43 89.25
TraesCS1B01G295600.1 Wheat cytosol 88.43 89.25
TraesCS1A01G286200.1 Wheat cytosol 88.43 89.25
TraesCS3B01G388900.1 Wheat cytosol 88.89 88.89
TraesCS3A01G356000.3 Wheat plastid 88.89 88.89
GSMUA_Achr8P02620_001 Banana cytosol 88.43 88.43
TraesCS5B01G489300.1 Wheat golgi 87.5 88.32
GSMUA_Achr10P... Banana cytosol 87.96 87.96
TraesCS5A01G476400.1 Wheat cytosol 87.04 87.85
TraesCS5D01G489700.1 Wheat cytosol 86.57 87.38
AT5G03520.1 Thale cress cytosol 85.19 85.19
OQU88745 Sorghum cytosol 88.43 84.51
HORVU1Hr1G072070.1 Barley cytosol 86.11 82.67
AT3G09900.1 Thale cress cytosol 83.33 82.57
TraesCS3D01G350000.3 Wheat cytosol 88.89 80.67
CDX99131 Canola cytosol 98.15 68.83
HORVU5Hr1G112790.2 Barley cytosol, extracellular 81.02 67.57
AT1G02130.1 Thale cress cytosol 59.26 63.05
HORVU3Hr1G086830.7 Barley cytosol 76.85 62.64
AT4G17530.1 Thale cress cytosol 57.87 61.88
AT5G47200.1 Thale cress cytosol 57.87 61.88
AT3G11730.1 Thale cress cytosol 54.63 57.56
Bra038265.1-P Field mustard cytosol 98.61 56.65
AT4G35860.1 Thale cress cytosol 43.06 44.08
AT4G17160.1 Thale cress cytosol 41.67 43.9
AT4G17170.1 Thale cress cytosol 42.13 43.13
Protein Annotations
MapMan:22.8.1.5Gene3D:3.40.50.300EntrezGene:823749UniProt:A0A178VAR9ProteinID:AEE78106.1ProteinID:AEE78107.1
ProteinID:AEE78108.1Symbol:ARA3ArrayExpress:AT3G46060EnsemblPlantsGene:AT3G46060RefSeq:AT3G46060TAIR:AT3G46060
RefSeq:AT3G46060-TAIR-GEnsemblPlants:AT3G46060.1TAIR:AT3G46060.1EMBL:AY035132EMBL:AY042795Unigene:At.258
EMBL:BT001952EMBL:BT002186ProteinID:CAB90933.1EMBL:D01025GO:GO:0000139GO:GO:0000166
GO:GO:0003674GO:GO:0003824GO:GO:0003924GO:GO:0005488GO:GO:0005515GO:GO:0005525
GO:GO:0005575GO:GO:0005622GO:GO:0005623GO:GO:0005737GO:GO:0005773GO:GO:0005774
GO:GO:0005794GO:GO:0005886GO:GO:0006810GO:GO:0006904GO:GO:0007154GO:GO:0007165
GO:GO:0008150GO:GO:0009306GO:GO:0009719GO:GO:0009873GO:GO:0009987GO:GO:0015031
GO:GO:0016020GO:GO:0016787GO:GO:0017157RefSeq:NP_001078248.1RefSeq:NP_001118780.1RefSeq:NP_190192.1
ProteinID:OAP03269.1InterPro:P-loop_NTPaseUniProt:P28186PFAM:PF00071PO:PO:0000005PO:PO:0000013
PO:PO:0000037PO:PO:0000084PO:PO:0000230PO:PO:0000293PO:PO:0001016PO:PO:0001017
PO:PO:0001054PO:PO:0001078PO:PO:0001081PO:PO:0001185PO:PO:0004507PO:PO:0007064
PO:PO:0007095PO:PO:0007098PO:PO:0007103PO:PO:0007115PO:PO:0007123PO:PO:0007611
PO:PO:0007616PO:PO:0008019PO:PO:0009005PO:PO:0009006PO:PO:0009009PO:PO:0009010
PO:PO:0009025PO:PO:0009029PO:PO:0009030PO:PO:0009031PO:PO:0009032PO:PO:0009046
PO:PO:0009047PO:PO:0009052PO:PO:0020030PO:PO:0020038PO:PO:0020100PO:PO:0020137
PO:PO:0025022PO:PO:0025195PO:PO:0025281PRINTS:PR00449PFscan:PS51419PANTHER:PTHR24073
PANTHER:PTHR24073:SF826SMART:SM00173SMART:SM00174SMART:SM00175SMART:SM00176SMART:SM00177
SUPFAM:SSF52540InterPro:Small_GTP-bd_domInterPro:Small_GTPaseTIGRFAMs:TIGR00231UniParc:UPI0000000B9CSEG:seg
Description
RABE1CRABE1c [Source:UniProtKB/TrEMBL;Acc:A0A178VAR9]
Coordinates
chr3:+:16917527..16920018
Molecular Weight (calculated)
23836.3 Da
IEP (calculated)
8.022
GRAVY (calculated)
-0.296
Length
216 amino acids
Sequence
(BLAST)
001: MAAPPARARA DYDYLIKLLL IGDSGVGKSC LLLRFSDGSF TTSFITTIGI DFKIRTIELD GKRIKLQIWD TAGQERFRTI TTAYYRGAMG ILLVYDVTDE
101: SSFNNIRNWI RNIEQHASDN VNKILVGNKA DMDESKRAVP TAKGQALADE YGIKFFETSA KTNLNVEEVF FSIGRDIKQR LSDTDSRAEP ATIKISQTDQ
201: AAGAGQATQK SACCGT
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.