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Sorghum
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • nucleus 2
  • cytosol 4
  • mitochondrion 1
  • extracellular 1
  • endoplasmic reticulum 1
  • vacuole 1
  • plasma membrane 1
  • golgi 1
PPI

Inferred distinct locusB in Crop

locusBlocations
EER87703
EES00126
EES04830 peroxisome
KXG32246
OQU77594
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Zm00001d038380_P001 Maize extracellular, plasma membrane 100.0 100.0
Zm00001d010538_P005 Maize cytosol 100.0 100.0
CDY72056 Canola cytosol 56.28 96.8
Os05t0461300-01 Rice plastid 96.74 96.3
GSMUA_Achr11P... Banana cytosol 96.28 95.83
TraesCS1D01G285200.1 Wheat cytosol 95.35 95.79
TraesCS1B01G295600.1 Wheat cytosol 95.35 95.79
TraesCS1A01G286200.1 Wheat cytosol 95.35 95.79
GSMUA_Achr10P... Banana cytosol 95.81 95.37
GSMUA_Achr9P03220_001 Banana cytosol 95.81 95.37
Solyc06g005350.2.1 Tomato cytosol 63.72 95.14
GSMUA_Achr6P34270_001 Banana cytosol 93.95 93.52
GSMUA_AchrUn_... Banana cytosol 93.95 93.52
EER93195 Sorghum cytosol 93.02 93.46
PGSC0003DMT400040138 Potato cytosol 93.49 93.06
GSMUA_Achr8P02620_001 Banana cytosol 93.02 92.59
VIT_06s0004g04200.t01 Wine grape cytosol 93.02 92.59
KRH29838 Soybean endoplasmic reticulum 92.09 92.52
VIT_13s0019g00520.t01 Wine grape extracellular 92.56 92.13
KRH01606 Soybean endoplasmic reticulum 92.56 92.13
Solyc11g073050.1.1 Tomato endoplasmic reticulum 92.56 92.13
KRH70501 Soybean endoplasmic reticulum 92.56 92.13
KRH24835 Soybean cytosol 91.63 92.06
GSMUA_Achr10P... Banana cytosol 92.09 91.67
PGSC0003DMT400022823 Potato cytosol 92.09 91.67
Solyc09g010370.2.1 Tomato extracellular, plastid 92.09 91.67
PGSC0003DMT400049296 Potato cytosol 91.63 91.2
VIT_08s0040g02490.t01 Wine grape cytosol 91.63 91.2
CDY30926 Canola cytosol 91.63 91.2
CDX68365 Canola cytosol 91.16 90.74
CDY71506 Canola cytosol 91.16 90.74
CDX86045 Canola cytosol 91.16 90.74
Bra019475.1-P Field mustard cytosol 91.16 90.74
KRH36193 Soybean endoplasmic reticulum, extracellular 91.16 90.74
KRH10292 Soybean cytosol 90.7 90.7
CDX77855 Canola cytosol 90.7 90.28
KRG90563 Soybean cytosol 90.7 90.28
AT5G59840.1 Thale cress cytosol 90.7 90.28
AT3G46060.1 Thale cress cytosol 90.7 90.28
KRH23030 Soybean endoplasmic reticulum 90.23 90.23
CDY31592 Canola cytosol 90.23 89.81
PGSC0003DMT400008917 Potato cytosol 90.23 89.81
PGSC0003DMT400071317 Potato cytosol 90.23 89.81
Solyc04g011360.2.1 Tomato plastid 90.23 89.81
OQU88745 Sorghum cytosol 93.95 89.38
Bra002527.1-P Field mustard cytosol 89.77 89.35
Solyc10g086350.1.1 Tomato cytosol, nucleus 89.77 89.35
AT3G53610.3 Thale cress cytosol 89.77 89.35
Bra006690.1-P Field mustard cytosol 88.84 88.43
Bra033830.1-P Field mustard cytosol 79.07 88.08
CDX88725 Canola cytosol 88.37 87.96
CDX88726 Canola cytosol 88.37 87.96
CDX80224 Canola cytosol 86.51 87.32
Bra020282.1-P Field mustard cytosol 86.98 86.57
CDY09249 Canola cytosol 86.98 86.57
HORVU1Hr1G072070.1 Barley cytosol 87.91 84.0
EER98157 Sorghum cytosol 80.47 80.09
CDY34032 Canola cytosol 53.02 77.55
CDY70243 Canola cytosol 52.56 74.34
CDY07577 Canola cytosol 89.77 72.28
CDY52746 Canola cytosol 89.3 71.38
Bra003149.1-P Field mustard cytosol 89.3 71.38
CDX94925 Canola cytosol 53.49 70.12
CDX99131 Canola cytosol 91.63 63.96
EES07529 Sorghum cytosol 57.67 61.08
EES03124 Sorghum cytosol 55.81 59.11
EES18842 Sorghum cytosol 54.42 57.07
EES10859 Sorghum cytosol 51.63 53.62
Bra038265.1-P Field mustard cytosol 91.16 52.13
EES10970 Sorghum cytoskeleton, cytosol, endoplasmic reticulum 41.4 42.38
EES05332 Sorghum cytosol 40.93 41.9
Protein Annotations
MapMan:22.8.1.5Gene3D:3.40.50.300EntrezGene:8072553UniProt:C5YZA7EnsemblPlants:EES19652ProteinID:EES19652
ProteinID:EES19652.1GO:GO:0000166GO:GO:0003674GO:GO:0003824GO:GO:0003924GO:GO:0005488
GO:GO:0005525GO:GO:0006810GO:GO:0006904GO:GO:0008150GO:GO:0009306GO:GO:0009987
GO:GO:0016787GO:GO:0017157InterPro:P-loop_NTPasePFAM:PF00071PRINTS:PR00449PFscan:PS51419
PANTHER:PTHR24073PANTHER:PTHR24073:SF642SMART:SM00173SMART:SM00174SMART:SM00175SMART:SM00176
SMART:SM00177EnsemblPlantsGene:SORBI_3009G164700SUPFAM:SSF52540unigene:Sbi.18683InterPro:Small_GTP-bd_domInterPro:Small_GTPase
TIGRFAMs:TIGR00231UniParc:UPI00017B6761RefSeq:XP_002441222.1SEG:seg::
Description
hypothetical protein
Coordinates
chr9:-:52079489..52082669
Molecular Weight (calculated)
23883.4 Da
IEP (calculated)
8.443
GRAVY (calculated)
-0.348
Length
215 amino acids
Sequence
(BLAST)
001: MAAPPARARA DYDYLIKLLL IGDSGVGKSC LLLRFSDGSF TTSFITTIGI DFKIRTIELD GKRIKLQIWD TAGQERFRTI TTAYYRGAMG ILLVYDVTDE
101: SSFNNIRNWI RNIEQHASDN VNKILVGNKA DMDESKRAVP TAKGQALADE YGIKFFETSA KTNLNVEQVF FSIARDIKQR LAETDSKPED KAIKINKPDQ
201: GSEAPAAQRS ACCGS
Best Arabidopsis Sequence Match ( AT3G46060.1 )
(BLAST)
001: MAAPPARARA DYDYLIKLLL IGDSGVGKSC LLLRFSDGSF TTSFITTIGI DFKIRTIELD GKRIKLQIWD TAGQERFRTI TTAYYRGAMG ILLVYDVTDE
101: SSFNNIRNWI RNIEQHASDN VNKILVGNKA DMDESKRAVP TAKGQALADE YGIKFFETSA KTNLNVEEVF FSIGRDIKQR LSDTDSRAEP ATIKISQTDQ
201: AAGAGQATQK SACCGT
Arabidopsis Description
RABE1CRABE1c [Source:UniProtKB/TrEMBL;Acc:A0A178VAR9]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.