CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 3
mitochondrion 1
endoplasmic reticulum 3
golgi 3
extracellular 2
vacuole 2
plasma membrane 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, secretory
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	endoplasmic reticulum, golgi, mitochondrion, nucleus
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
EES00126
EES03891
OQU77594
OQU78555

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G11730.1	EES00126	AT3G13710.1	21798944
AT3G11730.1	OQU77594	AT3G13710.1	21798944
AT3G11730.1	EES03891	AT3G54120.1	21798944
AT3G11730.1	OQU78555	AT3G54120.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2B01G327900.1	Wheat	cytosol	89.86	90.29
Zm00001d003588_P002	Maize	cytosol, extracellular	63.77	88.59
TraesCS2D01G309200.2	Wheat	cytosol	89.37	86.85
TraesCS2A01G311000.3	Wheat	cytosol	89.37	86.85
Zm00001d005215_P001	Maize	cytosol	60.87	82.89
KRH26285	Soybean	endoplasmic reticulum	76.33	78.61
VIT_12s0035g01150.t01	Wine grape	vacuole	76.33	78.22
KRH06045	Soybean	cytosol	75.85	78.11
GSMUA_Achr10P...	Banana	cytosol	75.36	77.23
Solyc01g103370.2.1	Tomato	endoplasmic reticulum	74.88	76.73
PGSC0003DMT400064019	Potato	cytosol, extracellular	74.4	76.24
EES18842	Sorghum	cytosol	75.36	76.1
CDX73855	Canola	cytosol	74.4	74.76
CDY56593	Canola	cytosol	74.4	74.76
AT3G11730.1	Thale cress	cytosol	73.91	74.63
Bra001418.1-P	Field mustard	cytosol, extracellular	73.91	74.27
Bra038676.1-P	Field mustard	vacuole	73.91	74.27
CDY47919	Canola	vacuole	73.91	74.27
EES03124	Sorghum	cytosol	72.46	73.89
EES07529	Sorghum	cytosol	71.01	72.41
Zm00001d003789_P002	Maize	extracellular, plasma membrane	84.54	66.29
GSMUA_Achr6P17450_001	Banana	cytosol	76.33	62.7
EES19652	Sorghum	cytosol	53.62	51.63
EER93195	Sorghum	cytosol	52.17	50.47
EER98157	Sorghum	cytosol	52.17	50.0
OQU88745	Sorghum	cytosol	52.66	48.23
EES10970	Sorghum	cytoskeleton, cytosol, endoplasmic reticulum	43.96	43.33
EES05332	Sorghum	cytosol	43.48	42.86

Protein Annotations

MapMan:22.8.1.4	Gene3D:3.40.50.300	EntrezGene:8075851	UniProt:C5Y956	EnsemblPlants:EES10859	ProteinID:EES10859
ProteinID:EES10859.1	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0003924	GO:GO:0005488
GO:GO:0005525	GO:GO:0016787	InterPro:P-loop_NTPase	PFAM:PF00071	PRINTS:PR00449	PFscan:PS51419
PANTHER:PTHR24073	PANTHER:PTHR24073:SF827	SMART:SM00173	SMART:SM00174	SMART:SM00175	SMART:SM00176
SMART:SM00177	EnsemblPlantsGene:SORBI_3006G091400	SUPFAM:SSF52540	InterPro:Small_GTP-bd_dom	InterPro:Small_GTPase	TIGRFAMs:TIGR00231
UniParc:UPI0001A86D3D	RefSeq:XP_002446531.1	:	:	:	:

Description

hypothetical protein

Coordinates

chr6:+:46126607..46129179

Molecular Weight (calculated)

23263.6 Da

IEP (calculated)

4.933

GRAVY (calculated)

-0.252

Length

207 amino acids

Sequence
(BLAST)

001: MGNEFDYLFK LLLIGDSSVG KSCFLLRFAD DSYVDSYIST IGVDFKIRTI EMEGKTIKLQ IWDTAGQERF RTITSSYYRG AHGIIIVYDI TDMESFNNVK
101: QWLSEIDRYA NDTVCKLLVG NKCDLAESRT VDTSVAQAYA EEIGIPFLET SAKDSINVEE AFLAMSAAIK NSKARSQAAL ERKPSNIVQM KGQPIQQEQQ
201: KSRCCST

Best Arabidopsis Sequence Match ( AT3G11730.1 )
(BLAST)

001: MSNEYDYLFK LLLIGDSSVG KSCLLLRFAD DAYIDSYIST IGVDFKIRTI EQDGKTIKLQ IWDTAGQERF RTITSSYYRG AHGIIIVYDC TEMESFNNVK
101: QWLSEIDRYA NESVCKLLIG NKNDMVESKV VSTETGRALA DELGIPFLET SAKDSINVEQ AFLTIAGEIK KKMGSQTNAN KTSGPGTVQM KGQPIQQNNG
201: GCCGQ

Arabidopsis Description

RABD1Ras-related protein RABD1 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZRE2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.