Factsheet for Zm00001d003789_P002

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, extracellular

Predictor Summary:

extracellular 4
endoplasmic reticulum 5
vacuole 4
plasma membrane 4
golgi 4
plastid 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular, plasma membrane
Any Predictor:	cytosol, secretory
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	cytosol

extracellular: 20408568
mitochondrion: 27297264
plasma membrane: 27341663

msms PMID: 27297264 doi

D Dahal, KJ Newton, BP Mooney

Division of Biological Sciences, ‡Department of Biochemistry, and §The Charles W Gehrke Proteomics Center, University of Missouri , Columbia, Missouri 65211, United States.

msms PMID: 27341663 doi

P Voothuluru, JC Anderson, RE Sharp, SC Peck

Bond Life Sciences Center, University of Missouri, Columbia, MO, 65211, USA., Division of Biochemistry, University of Missouri, Columbia, MO, 65211, USA., Division of Plant Sciences, University of Missouri, Columbia, MO, 65211, USA., Interdisciplinary Plant Group, University of Missouri, Columbia, MO, 65211, USA.

msms PMID: 20408568 doi

W Ma, N Muthreich, C Liao, M Franz-Wachtel, W Schütz, F Zhang, F Hochholdinger, C Li

Department of Plant Nutrition, China Agricultural University, Beijing, PR China.

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d037747_P001
Zm00001d039213_P001
Zm00001d039455_P002
Zm00001d042846_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G11730.1	Zm00001d037747_P001	AT3G13710.1	21798944
AT3G11730.1	Zm00001d039455_P002	AT3G13710.1	21798944
AT3G11730.1	Zm00001d039213_P001	AT3G54120.1	21798944
AT3G11730.1	Zm00001d042846_P001	AT3G54120.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d005215_P001	Maize	cytosol	54.55	94.74
Zm00001d003588_P002	Maize	cytosol, extracellular	49.24	87.25
EES10859	Sorghum	cytosol	66.29	84.54
TraesCS2B01G327900.1	Wheat	cytosol	64.02	82.04
TraesCS2D01G309200.2	Wheat	cytosol	63.64	78.87
TraesCS2A01G311000.3	Wheat	cytosol	63.64	78.87
KRH06045	Soybean	cytosol	57.2	75.12
VIT_12s0035g01150.t01	Wine grape	vacuole	57.2	74.75
KRH26285	Soybean	endoplasmic reticulum	56.82	74.63
GSMUA_Achr10P...	Banana	cytosol	56.06	73.27
Solyc01g103370.2.1	Tomato	endoplasmic reticulum	56.06	73.27
PGSC0003DMT400064019	Potato	cytosol, extracellular	55.68	72.77
Zm00001d035741_P002	Maize	cytosol	55.68	71.71
Bra001418.1-P	Field mustard	cytosol, extracellular	54.17	69.42
CDY47919	Canola	vacuole	54.17	69.42
Bra038676.1-P	Field mustard	vacuole	54.17	69.42
Zm00001d011162_P002	Maize	plasma membrane	53.03	68.97
CDY56593	Canola	cytosol	53.79	68.93
CDX73855	Canola	cytosol	53.79	68.93
AT3G11730.1	Thale cress	cytosol	53.03	68.29
GSMUA_Achr6P17450_001	Banana	cytosol	55.68	58.33
Zm00001d051336_P001	Maize	plastid	54.92	53.31
Zm00001d010538_P005	Maize	cytosol	38.64	47.44
Zm00001d034638_P001	Maize	cytosol	38.64	47.44
Zm00001d038380_P001	Maize	extracellular, plasma membrane	38.64	47.44
Zm00001d025660_P001	Maize	plasma membrane, plastid	32.95	41.43
Zm00001d017026_P003	Maize	cytosol, endoplasmic reticulum, nucleus	32.95	38.5
Zm00001d017456_P003	Maize	cytosol	53.03	34.91
Zm00001d050915_P004	Maize	cytosol	32.58	34.68
Zm00001d003347_P003	Maize	cytosol	23.48	33.16

Protein Annotations

MapMan:35.1	UniProt:A0A1D6EBJ8	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0003924
GO:GO:0005488	GO:GO:0005525	GO:GO:0005575	GO:GO:0005623	GO:GO:0005886	GO:GO:0006810
GO:GO:0008150	GO:GO:0015031	GO:GO:0016020	GO:GO:0016787	ProteinID:ONM17716.1	InterPro:P-loop_NTPase
PFAM:PF00071	PRINTS:PR00449	PFscan:PS51419	PANTHER:PTHR24073	PANTHER:PTHR24073:SF827	SMART:SM00173
SMART:SM00174	SMART:SM00175	SUPFAM:SSF52540	SignalP:SignalP-noTM	InterPro:Small_GTP-bd_dom	InterPro:Small_GTPase
TIGRFAMs:TIGR00231	UniParc:UPI000844683D	EnsemblPlantsGene:Zm00001d003789	EnsemblPlants:Zm00001d003789_P002	EnsemblPlants:Zm00001d003789_T002	SEG:seg

Description

Ras-related protein RABD1

Coordinates

chr2:+:59384911..59386717

Molecular Weight (calculated)

29735.4 Da

IEP (calculated)

6.951

GRAVY (calculated)

-0.227

Length

264 amino acids

Sequence
(BLAST)

001: MLRSSLLALF SESLFSSVLF LESKGGKHNE QRFDYLFKLL LIGDSLVGKS CFLLRFADDS YVDSYISTIG VDFKIRTVEV EGKTVKLQIW DTTGQERFRT
101: ITSSYYRGAH GIIVSKSLSL RNTFPKIIYL HFSEHTLVAP PLQNVYDITD MESFNNVKQW LDEIDRYAND SVRRLLVGNK CDLAENRAVD TSVDSSTGQN
201: FKAYAEEVGI PFLETSAKES INVEEAFLAM SAAIKKSKAG SQAALERKPS NVVQMKGRPI QQEQ

Best Arabidopsis Sequence Match ( AT1G02130.1 )
(BLAST)

001: MNPEYDYLFK LLLIGDSGVG KSCLLLRFSD DSYVESYIST IGVDFKIRTV EQDGKTIKLQ IWDTAGQERF RTITSSYYRG AHGIIIVYDV TDEESFNNVK
101: QWLSEIDRYA SDNVNKLLVG NKSDLTENRA IPYETAKAFA DEIGIPFMET SAKDATNVEQ AFMAMSASIK ERMASQPAGN NARPPTVQIR GQPVAQKNGC
201: CST

Arabidopsis Description

RABD2ARas-related protein RABD2a [Source:UniProtKB/Swiss-Prot;Acc:P28188]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.