Factsheet for Zm00001d051336_P001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

extracellular 5
endoplasmic reticulum 6
vacuole 4
plasma membrane 4
golgi 4

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	secretory
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	extracellular
YLoc:	endoplasmic reticulum

plastid: 22065420
plastid: 23198870
mitochondrion: 27297264

msms PMID: 27297264 doi

D Dahal, KJ Newton, BP Mooney

Division of Biological Sciences, ‡Department of Biochemistry, and §The Charles W Gehrke Proteomics Center, University of Missouri , Columbia, Missouri 65211, United States.

msms PMID: 23198870 doi

M Huang, G Friso, K Nishimura, X Qu, PD Olinares, W Majeran, Q Sun, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, United States.

msms PMID: 22065420 doi

W Majeran, G Friso, Y Asakura, X Qu, M Huang, L Ponnala, KP Watkins, A Barkan, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES07529	Sorghum	cytosol	72.79	97.54
Os02t0653800-01	Rice	plasma membrane	71.69	96.06
Os01t0179700-01	Rice	plasma membrane	71.32	95.57
VIT_00s1372g00020.t01	Wine grape	cytosol	66.91	91.92
TraesCS3D01G056500.1	Wheat	golgi	68.01	91.13
TraesCS3A01G056600.1	Wheat	cytosol	67.65	90.64
TraesCS3B01G070300.2	Wheat	cytosol	67.65	90.64
TraesCS3D01G056600.1	Wheat	plastid	67.65	90.64
GSMUA_Achr2P18340_001	Banana	plasma membrane	67.28	90.59
KRH04201	Soybean	cytosol, extracellular	67.28	90.59
KRH57496	Soybean	endoplasmic reticulum	67.28	90.59
VIT_16s0013g00520.t01	Wine grape	extracellular	67.28	90.15
Solyc08g078070.2.1	Tomato	nucleus	67.28	90.15
PGSC0003DMT400067463	Potato	cytosol	66.91	89.66
TraesCS3A01G056500.1	Wheat	cytosol	66.91	89.66
HORVU3Hr1G010800.8	Barley	cytosol	53.68	89.57
KRH01059	Soybean	endoplasmic reticulum	66.18	89.11
GSMUA_Achr8P15030_001	Banana	cytosol	65.81	88.18
GSMUA_Achr11P...	Banana	cytosol	65.44	87.68
KRH40178	Soybean	endoplasmic reticulum	65.07	87.62
AT1G02130.1	Thale cress	cytosol	64.71	86.7
Solyc05g052070.2.1	Tomato	unclear	64.71	86.7
Bra012658.1-P	Field mustard	cytosol	64.34	86.63
Bra024956.1-P	Field mustard	cytosol	64.34	86.63
Bra022113.1-P	Field mustard	cytosol	64.34	86.63
Bra017497.1-P	Field mustard	cytosol	64.34	86.63
KRH66494	Soybean	endoplasmic reticulum	64.34	86.21
PGSC0003DMT400041326	Potato	cytosol	63.97	85.71
TraesCS3A01G056800.1	Wheat	cytosol	59.19	85.19
PGSC0003DMT400034028	Potato	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	63.24	84.73
Solyc05g053940.2.1	Tomato	nucleus, plastid, unclear	63.24	84.73
Zm00001d011162_P002	Maize	plasma membrane	61.76	82.76
GSMUA_Achr1P04400_001	Banana	endoplasmic reticulum, extracellular, plasma membrane	67.65	81.06
Solyc01g090170.2.1	Tomato	unclear	59.93	80.3
Zm00001d003588_P002	Maize	cytosol, extracellular	42.65	77.85
KRH48822	Soybean	cytosol, endoplasmic reticulum	44.49	76.58
Zm00001d035741_P002	Maize	cytosol	56.25	74.63
CDY38055	Canola	cytosol	64.34	73.84
TraesCS3A01G056900.1	Wheat	mitochondrion	43.01	70.06
HORVU3Hr1G010780.1	Barley	plasma membrane	68.38	66.67
Bra040162.1-P	Field mustard	cytosol	66.54	66.06
GSMUA_Achr7P06570_001	Banana	cytosol	66.18	65.45
TraesCS3A01G056700.1	Wheat	cytosol	60.66	64.71
Zm00001d005215_P001	Maize	cytosol	36.03	64.47
VIT_15s0021g01410.t01	Wine grape	cytosol	47.06	62.44
GSMUA_Achr11P...	Banana	endoplasmic reticulum, plastid	66.18	59.8
Zm00001d038380_P001	Maize	extracellular, plasma membrane	44.49	56.28
Zm00001d010538_P005	Maize	cytosol	44.49	56.28
Zm00001d034638_P001	Maize	cytosol	44.49	56.28
Zm00001d003789_P002	Maize	extracellular, plasma membrane	53.31	54.92
Zm00001d017456_P003	Maize	cytosol	73.53	49.88
Zm00001d025660_P001	Maize	plasma membrane, plastid	33.82	43.81
Zm00001d017026_P003	Maize	cytosol, endoplasmic reticulum, nucleus	33.09	39.82
Zm00001d050915_P004	Maize	cytosol	33.09	36.29
Zm00001d003347_P003	Maize	cytosol	24.63	35.83

Protein Annotations

EntrezGene:100217200	EntrezGene:100502159	MapMan:22.8.1.4	Gene3D:3.40.50.300	ProteinID:AQK54054.1	GO:GO:0000166
GO:GO:0003674	GO:GO:0003824	GO:GO:0003924	GO:GO:0005488	GO:GO:0005525	GO:GO:0016787
UniProt:K7UHM3	InterPro:P-loop_NTPase	PFAM:PF00071	PRINTS:PR00449	PFscan:PS51419	PANTHER:PTHR24073
PANTHER:PTHR24073:SF666	SMART:SM00173	SMART:SM00174	SMART:SM00175	SMART:SM00176	SMART:SM00177
SUPFAM:SSF52540	SignalP:SignalP-noTM	InterPro:Small_GTP-bd_dom	InterPro:Small_GTPase	TIGRFAMs:TIGR00231	TMHMM:TMhelix
UniParc:UPI000220F3BA	EnsemblPlantsGene:Zm00001d051336	EnsemblPlants:Zm00001d051336_P001	EnsemblPlants:Zm00001d051336_T001	SEG:seg	:

Description

Ras-related protein RABD2c

Coordinates

chr4:+:155037243..155041170

Molecular Weight (calculated)

29715.5 Da

IEP (calculated)

8.657

GRAVY (calculated)

-0.152

Length

272 amino acids

Sequence
(BLAST)

001: MDTKPFLLCL LRFSCAGGAV ACLPAWTVLR EETLPCLRRT EANAGPTATK ASARARTAMT HAGRARGFRS AALDDYLFKL LLIGDSGVGK SCLLLRFADD
101: SYLDSYISTI GVDFKIRTVE QDGKTIKLQI WDTAGQERFR TITSSYYRGA HGIIIVYDVT DQESFNNVKQ WLNEIDRYAS DNVNKLLVGN KSDLTANKVV
201: ATETAKAFAD EMGIPFMETS AKNAINVEQA FMAMAASIKD RMASQPAAAN ARPATVQIRG QPVNQKTSCC SS

Best Arabidopsis Sequence Match ( AT1G02130.1 )
(BLAST)

001: MNPEYDYLFK LLLIGDSGVG KSCLLLRFSD DSYVESYIST IGVDFKIRTV EQDGKTIKLQ IWDTAGQERF RTITSSYYRG AHGIIIVYDV TDEESFNNVK
101: QWLSEIDRYA SDNVNKLLVG NKSDLTENRA IPYETAKAFA DEIGIPFMET SAKDATNVEQ AFMAMSASIK ERMASQPAGN NARPPTVQIR GQPVAQKNGC
201: CST

Arabidopsis Description

RABD2ARas-related protein RABD2a [Source:UniProtKB/Swiss-Prot;Acc:P28188]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.