Factsheet for Bra040162.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 2
endoplasmic reticulum 1
golgi 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
AT4G17530.1	Thale cress	cytosol	71.17	96.53
Bra012658.1-P	Field mustard	cytosol	70.44	95.54
Bra017497.1-P	Field mustard	cytosol	70.07	95.05
Bra024956.1-P	Field mustard	cytosol	70.07	95.05
Bra022113.1-P	Field mustard	cytosol	70.07	95.05
CDY38404	Canola	endoplasmic reticulum	74.45	93.15
VIT_00s1372g00020.t01	Wine grape	cytosol	65.33	90.4
KRH57496	Soybean	endoplasmic reticulum	64.96	88.12
KRH04201	Soybean	cytosol, extracellular	64.96	88.12
GSMUA_Achr2P18340_001	Banana	plasma membrane	64.6	87.62
PGSC0003DMT400067463	Potato	cytosol	64.6	87.19
GSMUA_Achr8P15030_001	Banana	cytosol	64.6	87.19
Solyc08g078070.2.1	Tomato	nucleus	64.6	87.19
VIT_16s0013g00520.t01	Wine grape	extracellular	64.6	87.19
Os01t0179700-01	Rice	plasma membrane	64.23	86.7
Os02t0653800-01	Rice	plasma membrane	64.23	86.7
EES07529	Sorghum	cytosol	64.23	86.7
GSMUA_Achr11P...	Banana	cytosol	64.23	86.7
Solyc05g053940.2.1	Tomato	nucleus, plastid, unclear	62.77	84.73
TraesCS3D01G056500.1	Wheat	golgi	62.77	84.73
PGSC0003DMT400034028	Potato	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	62.77	84.73
TraesCS3A01G056600.1	Wheat	cytosol	62.41	84.24
TraesCS3B01G070300.2	Wheat	cytosol	62.41	84.24
TraesCS3D01G056600.1	Wheat	plastid	62.41	84.24
KRH01059	Soybean	endoplasmic reticulum	61.68	83.66
HORVU3Hr1G010800.8	Barley	cytosol	49.63	83.44
PGSC0003DMT400041326	Potato	cytosol	61.68	83.25
Solyc05g052070.2.1	Tomato	unclear	61.68	83.25
TraesCS3A01G056500.1	Wheat	cytosol	61.68	83.25
KRH40178	Soybean	endoplasmic reticulum	61.31	83.17
KRH66494	Soybean	endoplasmic reticulum	61.31	82.76
Solyc01g090170.2.1	Tomato	unclear	60.58	81.77
GSMUA_Achr1P04400_001	Banana	endoplasmic reticulum, extracellular, plasma membrane	65.33	78.85
TraesCS3A01G056800.1	Wheat	cytosol	54.38	78.84
KRH48822	Soybean	cytosol, endoplasmic reticulum	43.07	74.68
Bra001418.1-P	Field mustard	cytosol, extracellular	54.74	72.82
Bra038676.1-P	Field mustard	vacuole	54.74	72.82
Zm00001d051336_P001	Maize	plastid	66.06	66.54
GSMUA_Achr7P06570_001	Banana	cytosol	66.42	66.18
TraesCS3A01G056900.1	Wheat	mitochondrion	39.42	64.67
HORVU3Hr1G010780.1	Barley	plasma membrane	63.87	62.72
GSMUA_Achr11P...	Banana	endoplasmic reticulum, plastid	67.15	61.13
TraesCS3A01G056700.1	Wheat	cytosol	56.2	60.39
VIT_15s0021g01410.t01	Wine grape	cytosol	44.16	59.02
Bra019475.1-P	Field mustard	cytosol	44.89	56.94
Bra002527.1-P	Field mustard	cytosol	44.53	56.48
Bra006690.1-P	Field mustard	cytosol	43.8	55.56
Bra033830.1-P	Field mustard	cytosol	38.69	54.92
Bra020282.1-P	Field mustard	cytosol	43.07	54.63
Bra005767.1-P	Field mustard	cytosol	43.07	54.38
Bra029803.1-P	Field mustard	cytosol	42.34	51.33
Bra003149.1-P	Field mustard	cytosol	43.8	44.61
Bra011645.1-P	Field mustard	cytosol	34.31	44.55
Zm00001d017456_P003	Maize	cytosol	64.6	44.14
Bra017733.1-P	Field mustard	cytosol	33.94	44.08
Bra021065.1-P	Field mustard	cytosol	33.58	43.81
Bra026231.1-P	Field mustard	cytosol	33.21	43.13
Bra038265.1-P	Field mustard	cytosol	45.26	32.98

Protein Annotations

MapMan:22.8.1.4	Gene3D:3.40.50.300	EnsemblPlantsGene:Bra040162	EnsemblPlants:Bra040162.1	EnsemblPlants:Bra040162.1-P	GO:GO:0000166
GO:GO:0003674	GO:GO:0003824	GO:GO:0003924	GO:GO:0005488	GO:GO:0005525	GO:GO:0016787
UniProt:M4FGD4	InterPro:P-loop_NTPase	PFAM:PF00071	PRINTS:PR00449	PFscan:PS51419	PANTHER:PTHR24073
PANTHER:PTHR24073:SF666	SMART:SM00173	SMART:SM00174	SMART:SM00175	SMART:SM00176	SMART:SM00177
SUPFAM:SSF52540	InterPro:Small_GTP-bd_dom	InterPro:Small_GTPase	TIGRFAMs:TIGR00231	UniParc:UPI0002545CBC	:

Description

AT4G17530 (E=2e-108) RAB1C, ATRAB1C, ATRABD2C | ATRAB1C; GTP binding

Coordinates

chrA01:-:4394515..4396333

Molecular Weight (calculated)

30359.9 Da

IEP (calculated)

7.403

GRAVY (calculated)

-0.288

Length

274 amino acids

Sequence
(BLAST)

001: MKLPLLHASS GLEMTRHQIN TETYSNESNH RVDLSYFLTT SSSVDTKRSF TSLSLSQALL TGRTLCLSAE SSLRFYRDYL FKLLLIGDSG VGKSCLLLRF
101: ADDSYLDSYI STIGVDFKIR TVEQDGKTIK LQIWDTAGQE RFRTITSSYY RGAHGIIVTY DVTDQESFNN VKQWLNEIDR YASENVNKLL VGNKCDLTSQ
201: KVVSTETAKA FADELGIPFL ETSAKNATNV EEAFMAMTAA IKTRMASQPA GGSKPSTVQI RGQPVNQQSG CCSS

Best Arabidopsis Sequence Match ( AT4G17530.1 )
(BLAST)

001: MNPEYDYLFK LLLIGDSGVG KSCLLLRFAD DSYLDSYIST IGVDFKIRTV EQDGKTIKLQ IWDTAGQERF RTITSSYYRG AHGIIVTYDV TDLESFNNVK
101: QWLNEIDRYA SENVNKLLVG NKCDLTSQKV VSTETAKAFA DELGIPFLET SAKNATNVEE AFMAMTAAIK TRMASQPAGG SKPPTVQIRG QPVNQQSGCC
201: SS

Arabidopsis Description

RABD2CRAB1C [Source:UniProtKB/TrEMBL;Acc:A0A178USY3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.