Factsheet for Bra026231.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
extracellular 2
endoplasmic reticulum 4
vacuole 2
plasma membrane 2
golgi 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, secretory
BaCelLo:	nucleus
EpiLoc:	cytosol
iPSORT:	secretory
MultiLoc:	cytosol
Plant-mPloc:	endoplasmic reticulum, golgi
PProwler:	secretory
WoLF PSORT:	cytosol
YLoc:	endoplasmic reticulum

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra024839.1-P
Bra024840.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G17170.1	Bra024839.1-P	AT2G01950.1	19000166
AT4G17170.1	Bra024840.1-P	AT2G01950.1	19000166

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY42961	Canola	cytosol	100.0	100.0
CDY35596	Canola	cytosol	100.0	100.0
AT4G17170.1	Thale cress	cytosol	99.05	99.05
Bra021065.1-P	Field mustard	cytosol	97.63	98.1
KRH36659	Soybean	cytosol	96.21	96.21
KRH11646	Soybean	endoplasmic reticulum	96.21	96.21
Bra017733.1-P	Field mustard	cytosol	87.68	87.68
Bra011645.1-P	Field mustard	cytosol	86.73	86.73
TraesCS3D01G495900.1	Wheat	cytosol	57.82	68.16
TraesCS3A01G489900.1	Wheat	cytosol	57.35	67.6
TraesCS3B01G547700.1	Wheat	plastid	52.61	53.37
VIT_00s0455g00010.t01	Wine grape	cytosol	32.7	51.88
Bra001418.1-P	Field mustard	cytosol, extracellular	45.97	47.09
Bra038676.1-P	Field mustard	vacuole	45.02	46.12
Bra022113.1-P	Field mustard	cytosol	44.08	46.04
Bra017497.1-P	Field mustard	cytosol	44.08	46.04
Bra024956.1-P	Field mustard	cytosol	43.6	45.54
Bra012658.1-P	Field mustard	cytosol	43.6	45.54
Bra019475.1-P	Field mustard	cytosol	43.13	42.13
Bra002527.1-P	Field mustard	cytosol	43.13	42.13
Bra006690.1-P	Field mustard	cytosol	42.65	41.67
Bra020282.1-P	Field mustard	cytosol	41.71	40.74
Bra005767.1-P	Field mustard	cytosol	40.76	39.63
Bra033830.1-P	Field mustard	cytosol	35.55	38.86
Bra029803.1-P	Field mustard	cytosol	40.28	37.61
Bra040162.1-P	Field mustard	cytosol	43.13	33.21
Bra003149.1-P	Field mustard	cytosol	41.71	32.71
Bra038265.1-P	Field mustard	cytosol	41.71	23.4

Protein Annotations

MapMan:22.8.1.2	Gene3D:3.40.50.300	EnsemblPlantsGene:Bra026231	EnsemblPlants:Bra026231.1	EnsemblPlants:Bra026231.1-P	GO:GO:0000166
GO:GO:0003674	GO:GO:0003824	GO:GO:0003924	GO:GO:0005488	GO:GO:0005525	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005773	GO:GO:0005886	GO:GO:0016020
GO:GO:0016787	UniProt:M4EBS2	InterPro:P-loop_NTPase	PFAM:PF00071	PRINTS:PR00449	PFscan:PS51419
PANTHER:PTHR24073	PANTHER:PTHR24073:SF597	SMART:SM00173	SMART:SM00174	SMART:SM00175	SMART:SM00176
SUPFAM:SSF52540	InterPro:Small_GTP-bd_dom	InterPro:Small_GTPase	TIGRFAMs:TIGR00231	UniParc:UPI000254430E	SEG:seg

Description

AT4G17170 (E=1e-104) AT-RAB2, ATRABB1C, ATRAB2A, RAB2A, RABB1C, ATRAB-B1B, RAB-B1B | RABB1C (ARABIDOPSIS RAB GTPASE HOMOLOG B1C); GTP binding / GTPase

Coordinates

chrA01:+:10493768..10495115

Molecular Weight (calculated)

23179.6 Da

IEP (calculated)

7.498

GRAVY (calculated)

-0.233

Length

211 amino acids

Sequence
(BLAST)

001: MSYAYLFKYI IIGDTGVGKS CLLLQFTDKR FQPVHDLTIG VEFGARMITI DNKPLKLQIW DTAGQESFRS ITRSYYRGAA GALLVYDITR RETFNHLASW
101: LEDARQHANA NMTIMLIGNK CDLAHRRAVT TEEGEQFAKE HGLIFMEASA KTAQNVEEAF IKTAATIYKK IQDGVFDVSN ESYGIKVGYG GIPGPSGGRD
201: GSTSQGGGCC G

Best Arabidopsis Sequence Match ( AT4G17170.1 )
(BLAST)

001: MSYAYLFKYI IIGDTGVGKS CLLLQFTDKR FQPVHDLTIG VEFGARMITI DNKPIKLQIW DTAGQESFRS ITRSYYRGAA GALLVYDITR RETFNHLASW
101: LEDARQHANA NMTIMLIGNK CDLAHRRAVS TEEGEQFAKE HGLIFMEASA KTAQNVEEAF IKTAATIYKK IQDGVFDVSN ESYGIKVGYG GIPGPSGGRD
201: GSTSQGGGCC G

Arabidopsis Description

RABB1CRABB1C [Source:UniProtKB/TrEMBL;Acc:A0A178V4V1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.