Factsheet for TraesCS3B01G547700.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5
cytosol 1
extracellular 1
endoplasmic reticulum 2
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, plastid, secretory
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	cytosol
Predotar:	secretory
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	endoplasmic reticulum

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS3A01G099400.1
TraesCS3B01G115800.1
TraesCS3D01G099700.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G17170.1	TraesCS3A01G099400.1	AT2G01950.1	19000166
AT4G17170.1	TraesCS3B01G115800.1	AT2G01950.1	19000166
AT4G17170.1	TraesCS3D01G099700.1	AT2G01950.1	19000166

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3A01G489900.1	Wheat	cytosol	72.12	83.8
TraesCS3D01G495900.1	Wheat	cytosol	70.67	82.12
TraesCS6B01G230400.2	Wheat	cytosol	54.81	54.29
TraesCS2B01G350600.1	Wheat	cytosol	54.81	54.29
AT4G17170.1	Thale cress	cytosol	53.85	53.08
KRH11646	Soybean	endoplasmic reticulum	53.85	53.08
KRH36659	Soybean	cytosol	53.85	53.08
Bra026231.1-P	Field mustard	cytosol	53.37	52.61
CDY42961	Canola	cytosol	53.37	52.61
CDY35596	Canola	cytosol	53.37	52.61
CDY09641	Canola	cytosol	53.37	52.61
TraesCS5B01G255300.1	Wheat	cytosol	45.19	50.27
TraesCS2B01G542700.1	Wheat	cytosol	43.27	40.91
TraesCS1B01G019100.2	Wheat	golgi	32.69	33.17
TraesCS3B01G070300.2	Wheat	cytosol	31.73	32.51
VIT_00s0455g00010.t01	Wine grape	cytosol	20.19	31.58
TraesCS2B01G327900.1	Wheat	cytosol	30.77	31.07
TraesCS1B01G295600.1	Wheat	cytosol	31.73	30.84
TraesCS3B01G230700.1	Wheat	cytosol	32.69	30.77
TraesCS3B01G388900.1	Wheat	cytosol	31.73	30.56
TraesCS5B01G489300.1	Wheat	golgi	31.25	30.37

Protein Annotations

MapMan:22.8.1.2	Gene3D:3.40.50.300	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0003924
GO:GO:0005488	GO:GO:0005525	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005773	GO:GO:0005886	GO:GO:0016020	GO:GO:0016787	InterPro:P-loop_NTPase	PFAM:PF00071
PRINTS:PR00449	PFscan:PS51419	PANTHER:PTHR24073	PANTHER:PTHR24073:SF843	SMART:SM00173	SMART:SM00174
SMART:SM00175	SUPFAM:SSF52540	InterPro:Small_GTP-bd_dom	InterPro:Small_GTPase	TIGRFAMs:TIGR00231	EnsemblPlantsGene:TraesCS3B01G547700
EnsemblPlants:TraesCS3B01G547700.1	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr3B:+:783413489..783414580

Molecular Weight (calculated)

23254.1 Da

IEP (calculated)

8.222

GRAVY (calculated)

-0.091

Length

208 amino acids

Sequence
(BLAST)

001: MSLYNFTYVL IGDSGTLPGS SSNPLLLLLV PSRAALLSMS GRSDWMVRRP SAGVGKTCLL VQFLHKEFHP VLELNLDTER GDRMITIDNK PVKLLIWDTP
101: GRDAFRSLTT PLYYMAVGAL LVYDITRRET SNHLVNWLQD ARQYSHPGMT IMLIGNKCDL SHSRAVSYEE GKRFAEDHGL LFMEASAKTA QNVVEGFLQT
201: AGAIYQKT

Best Arabidopsis Sequence Match ( AT4G17160.1 )
(BLAST)

001: MSYAYRFKYI IIGDTGVGKS CLLLKFTDKR FQAVHDLTIG VEFGAKTITI DNKPIKLQIW DTAGQESFRS VTRSYYRGRA GTLLVYDITR RETFNHLASW
101: LEEARQHASE NMTTMLIGNK CDLEDKRTVS TEEGEQFARE HGLIFMEASA KTAHNVEEAF VETAATIYKR IQDGVVDEAN EPGITPGPFG GKDASSSQQR
201: RGCCG

Arabidopsis Description

RABB1ARABB1a [Source:UniProtKB/TrEMBL;Acc:A0A178UXW9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.