CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum

Predictor Summary:

nucleus 1
cytosol 3
extracellular 2
endoplasmic reticulum 4
vacuole 2
plasma membrane 2
golgi 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum
Any Predictor:	cytosol, nucleus, secretory
BaCelLo:	nucleus
EpiLoc:	cytosol
iPSORT:	secretory
MultiLoc:	cytosol
Plant-mPloc:	endoplasmic reticulum, golgi
PProwler:	secretory
WoLF PSORT:	cytosol
YLoc:	endoplasmic reticulum

nucleus: 21132161
extracellular: 25724908
endoplasmic reticulum: 27224218
endoplasmic reticulum: 28499913
mitochondrion: 28499913

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

msms PMID: 25724908 doi

VC Clarke, PC Loughlin, A Gavrin, C Chen, EM Brear, DA Day, PM Smith

From the ‡University of Sydney, School of Biological Sciences, Sydney Australia;, From the ‡University of Sydney, School of Biological Sciences, Sydney Australia; penny.smith@sydney.edu.au., From the ‡University of Sydney, School of Biological Sciences, Sydney Australia; §Flinders University, School of Biological Sciences, Adelaide Australia.

msms PMID: 27224218 doi

X Wang, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH42483
KRH58580

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G17170.1	KRH42483	AT2G01950.1	19000166
AT4G17170.1	KRH58580	AT2G01950.1	19000166

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH36659	Soybean	cytosol	100.0	100.0
AT4G17170.1	Thale cress	cytosol	97.16	97.16
Bra026231.1-P	Field mustard	cytosol	96.21	96.21
CDY35596	Canola	cytosol	96.21	96.21
CDY42961	Canola	cytosol	96.21	96.21
CDY09641	Canola	cytosol	95.73	95.73
KRG93957	Soybean	endoplasmic reticulum	85.31	85.31
KRH58242	Soybean	endoplasmic reticulum	84.83	84.83
TraesCS3D01G495900.1	Wheat	cytosol	58.29	68.72
TraesCS3A01G489900.1	Wheat	cytosol	57.82	68.16
TraesCS3B01G547700.1	Wheat	plastid	53.08	53.85
VIT_00s0455g00010.t01	Wine grape	cytosol	33.18	52.63
KRH01059	Soybean	endoplasmic reticulum	47.39	49.51
KRH40178	Soybean	endoplasmic reticulum	46.45	48.51
KRH57496	Soybean	endoplasmic reticulum	45.97	48.02
KRH04201	Soybean	cytosol, extracellular	45.97	48.02
KRH66494	Soybean	endoplasmic reticulum	44.08	45.81
KRH26285	Soybean	endoplasmic reticulum	42.65	44.78
KRH06045	Soybean	cytosol	42.18	44.28
KRH23030	Soybean	endoplasmic reticulum	43.6	42.79
KRH10292	Soybean	cytosol	43.6	42.79
KRH24835	Soybean	cytosol	43.13	42.52
KRH29838	Soybean	endoplasmic reticulum	43.13	42.52
KRH36193	Soybean	endoplasmic reticulum, extracellular	42.65	41.67
KRH70501	Soybean	endoplasmic reticulum	42.65	41.67
KRH01606	Soybean	endoplasmic reticulum	42.65	41.67
KRG90563	Soybean	cytosol	42.65	41.67
KRH48822	Soybean	cytosol, endoplasmic reticulum	30.33	40.51

Protein Annotations

EntrezGene:100784816	MapMan:22.8.1.2	Gene3D:3.40.50.300	EMBL:ACUP02005387	EMBL:ACUP02009231	EnsemblPlantsGene:GLYMA_15G122300
GO:GO:0000139	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0003924	GO:GO:0005488
GO:GO:0005525	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005768
GO:GO:0005794	GO:GO:0006810	GO:GO:0008150	GO:GO:0009987	GO:GO:0016020	GO:GO:0016043
GO:GO:0016787	GO:GO:0030100	UniProt:I1L068	EnsemblPlants:KRH11646	ProteinID:KRH11646	ProteinID:KRH11646.1
ProteinID:KRH36659.1	InterPro:P-loop_NTPase	PFAM:PF00071	PRINTS:PR00449	PFscan:PS51419	PANTHER:PTHR24073
PANTHER:PTHR24073:SF597	SMART:SM00173	SMART:SM00174	SMART:SM00175	SMART:SM00176	SUPFAM:SSF52540
InterPro:Small_GTP-bd_dom	InterPro:Small_GTPase	TIGRFAMs:TIGR00231	UniParc:UPI000009D95E	SEG:seg	:

Description

hypothetical protein

Coordinates

chr15:+:9708067..9711494

Molecular Weight (calculated)

23148.6 Da

IEP (calculated)

7.498

GRAVY (calculated)

-0.201

Length

211 amino acids

Sequence
(BLAST)

001: MSYAYLFKYI IIGDTGVGKS CLLLQFTDKR FQPVHDLTIG VEFGARMITI DNKPIKLQIW DTAGQESFRS ITRSYYRGAA GALLVYDITR RETFNHLASW
101: LEDARQHANA NMTIMLIGNK CDLAHRRAVS TEEGEQFAKE HGLIFMEASA KTAQNVEEAF IKTAATIYKK IQDGVFDVSN ESYGIKVGYG GIPGPSGGRD
201: GPSASAGGCC S

Best Arabidopsis Sequence Match ( AT4G17170.1 )
(BLAST)

Arabidopsis Description

RABB1CRABB1C [Source:UniProtKB/TrEMBL;Acc:A0A178V4V1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.