CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, extracellular

Predictor Summary:

nucleus 2
cytosol 4
mitochondrion 1
extracellular 2
endoplasmic reticulum 2
vacuole 2
plasma membrane 2
golgi 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum, extracellular
Any Predictor:	cytosol, mitochondrion, nucleus, secretory
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	nucleus
Predotar:	secretory
PProwler:	mitochondrion
TargetP:	secretory
WoLF PSORT:	cytosol
YLoc:	cytosol

extracellular: 25724908
endoplasmic reticulum: 27224218

msms PMID: 25724908 doi

VC Clarke, PC Loughlin, A Gavrin, C Chen, EM Brear, DA Day, PM Smith

From the ‡University of Sydney, School of Biological Sciences, Sydney Australia;, From the ‡University of Sydney, School of Biological Sciences, Sydney Australia; penny.smith@sydney.edu.au., From the ‡University of Sydney, School of Biological Sciences, Sydney Australia; §Flinders University, School of Biological Sciences, Adelaide Australia.

msms PMID: 27224218 doi

X Wang, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG90563	Soybean	cytosol	99.07	99.07
KRH70501	Soybean	endoplasmic reticulum	97.69	97.69
KRH01606	Soybean	endoplasmic reticulum	97.22	97.22
KRH29838	Soybean	endoplasmic reticulum	94.91	95.79
VIT_13s0019g00520.t01	Wine grape	extracellular	95.37	95.37
KRH24835	Soybean	cytosol	94.44	95.33
KRH10292	Soybean	cytosol	92.59	93.02
KRH23030	Soybean	endoplasmic reticulum	92.13	92.56
PGSC0003DMT400071317	Potato	cytosol	92.13	92.13
Solyc04g011360.2.1	Tomato	plastid	91.67	91.67
GSMUA_Achr9P03220_001	Banana	cytosol	91.67	91.67
GSMUA_Achr6P34270_001	Banana	cytosol	91.67	91.67
GSMUA_Achr11P...	Banana	cytosol	91.67	91.67
GSMUA_Achr10P...	Banana	cytosol	91.67	91.67
Os07t0239400-01	Rice	plasma membrane	91.2	91.63
EES19652	Sorghum	cytosol	90.74	91.16
Zm00001d010538_P005	Maize	cytosol	90.74	91.16
Zm00001d038380_P001	Maize	extracellular, plasma membrane	90.74	91.16
GSMUA_AchrUn_...	Banana	cytosol	90.74	90.74
Os05t0461300-01	Rice	plastid	90.74	90.74
Os03t0819900-01	Rice	plasma membrane	89.81	90.65
EER93195	Sorghum	cytosol	89.35	90.19
Zm00001d034638_P001	Maize	cytosol	89.35	89.77
GSMUA_Achr10P...	Banana	cytosol	89.35	89.35
TraesCS3A01G356000.3	Wheat	plastid	89.35	89.35
TraesCS1D01G285200.1	Wheat	cytosol	88.43	89.25
TraesCS1B01G295600.1	Wheat	cytosol	88.43	89.25
TraesCS1A01G286200.1	Wheat	cytosol	88.43	89.25
TraesCS5B01G489300.1	Wheat	golgi	88.43	89.25
TraesCS3B01G388900.1	Wheat	cytosol	88.89	88.89
GSMUA_Achr8P02620_001	Banana	cytosol	88.89	88.89
TraesCS5A01G476400.1	Wheat	cytosol	87.96	88.78
TraesCS5D01G489700.1	Wheat	cytosol	87.5	88.32
OQU88745	Sorghum	cytosol	89.35	85.4
HORVU1Hr1G072070.1	Barley	cytosol	85.19	81.78
TraesCS3D01G350000.3	Wheat	cytosol	88.89	80.67
HORVU5Hr1G112790.2	Barley	cytosol, extracellular	81.48	67.95
KRH01059	Soybean	endoplasmic reticulum	59.72	63.86
KRH40178	Soybean	endoplasmic reticulum	59.26	63.37
HORVU3Hr1G086830.7	Barley	cytosol	76.39	62.26
KRH66494	Soybean	endoplasmic reticulum	58.33	62.07
KRH57496	Soybean	endoplasmic reticulum	57.87	61.88
KRH04201	Soybean	cytosol, extracellular	57.87	61.88
KRH06045	Soybean	cytosol	53.7	57.71
KRH26285	Soybean	endoplasmic reticulum	53.24	57.21
KRH48822	Soybean	cytosol, endoplasmic reticulum	38.43	52.53
KRH36659	Soybean	cytosol	41.67	42.65
KRH11646	Soybean	endoplasmic reticulum	41.67	42.65
KRH58242	Soybean	endoplasmic reticulum	40.74	41.71
KRG93957	Soybean	endoplasmic reticulum	40.74	41.71

Protein Annotations

MapMan:22.8.1.5	Gene3D:3.40.50.300	EMBL:ACUP02006721	EnsemblPlantsGene:GLYMA_10G290000	GO:GO:0000166	GO:GO:0003674
GO:GO:0003824	GO:GO:0003924	GO:GO:0005488	GO:GO:0005525	GO:GO:0006810	GO:GO:0006904
GO:GO:0008150	GO:GO:0009306	GO:GO:0009987	GO:GO:0016787	GO:GO:0017157	UniProt:I1LFC6
EnsemblPlants:KRH36193	ProteinID:KRH36193	ProteinID:KRH36193.1	InterPro:P-loop_NTPase	PFAM:PF00071	PRINTS:PR00449
PFscan:PS51419	PANTHER:PTHR24073	PANTHER:PTHR24073:SF626	SMART:SM00173	SMART:SM00174	SMART:SM00175
SMART:SM00176	SMART:SM00177	SUPFAM:SSF52540	InterPro:Small_GTP-bd_dom	InterPro:Small_GTPase	TIGRFAMs:TIGR00231
UniParc:UPI00023CDBFC	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr10:+:50825758..50828897

Molecular Weight (calculated)

23904.4 Da

IEP (calculated)

8.022

GRAVY (calculated)

-0.325

Length

216 amino acids

Sequence
(BLAST)

001: MAAAPARARA DYDYLIKLLL IGDSGVGKSC LLLRFSDGSF TTSFITTIGI DFKIRTIELD GKRIKLQIWD TAGQERFRTI TTAYYRGAMG ILLVYDVTDE
101: ASFNNIRNWI RNIEQHASDN VNKILVGNKA DMDESKRAVP TSKGQALADE YGIKFFETSA KTNMNVEEVF FSIARDIKQR LADTDSRAEP QTIKINQPDQ
201: AASGGQPAQK SACCGS

Best Arabidopsis Sequence Match ( AT5G59840.1 )
(BLAST)

001: MAAPPARARA DYDYLIKLLL IGDSGVGKSC LLLRFSDGSF TTSFITTIGI DFKIRTIELD GKRIKLQIWD TAGQERFRTI TTAYYRGAMG ILLVYDVTDE
101: SSFNNIRNWI RNIEQHASDN VNKILVGNKA DMDESKRAVP KSKGQALADE YGIKFFETSA KTNLNVEEVF FSIAKDIKQR LADTDSRAEP ATIKISQTDQ
201: AAGAGQATQK SACCGS

Arabidopsis Description

Putative GTP-binding protein ara-3 [Source:UniProtKB/TrEMBL;Acc:Q9FJF1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.