CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 4
mitochondrion 1
extracellular 1
golgi 1
plasma membrane 1
endoplasmic reticulum 1
vacuole 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, secretory
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	nucleus
Predotar:	secretory
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
EER87703
EES00126
EES04830	peroxisome
KXG32246
OQU77594

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G46060.1	EES04830	AT1G29260.1	23297417
AT3G46060.1	KXG32246	AT3G06540.1	21798944
AT3G46060.1	EES00126	AT3G13720.1	21798944
AT3G46060.1	OQU77594	AT3G13720.1	21798944
AT3G46060.1	EER87703	AT4G25660.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os03t0819900-01	Rice	plasma membrane	98.6	98.6
Zm00001d034638_P001	Maize	cytosol	98.6	98.14
CDY72056	Canola	cytosol	56.07	96.0
Solyc06g005350.2.1	Tomato	cytosol	63.55	94.44
GSMUA_AchrUn_...	Banana	cytosol	93.93	93.06
EES19652	Sorghum	cytosol	93.46	93.02
GSMUA_Achr10P...	Banana	cytosol	93.46	92.59
GSMUA_Achr9P03220_001	Banana	cytosol	93.46	92.59
VIT_13s0019g00520.t01	Wine grape	extracellular	92.52	91.67
GSMUA_Achr6P34270_001	Banana	cytosol	92.52	91.67
GSMUA_Achr11P...	Banana	cytosol	92.52	91.67
PGSC0003DMT400040138	Potato	cytosol	92.52	91.67
KRH29838	Soybean	endoplasmic reticulum	91.12	91.12
TraesCS5B01G489300.1	Wheat	golgi	91.12	91.12
TraesCS5A01G476400.1	Wheat	cytosol	91.12	91.12
PGSC0003DMT400049296	Potato	cytosol	91.59	90.74
KRH01606	Soybean	endoplasmic reticulum	91.59	90.74
KRH70501	Soybean	endoplasmic reticulum	91.59	90.74
Bra019475.1-P	Field mustard	cytosol	91.59	90.74
CDY30926	Canola	cytosol	91.59	90.74
Solyc11g073050.1.1	Tomato	endoplasmic reticulum	91.59	90.74
KRH24835	Soybean	cytosol	90.65	90.65
TraesCS5D01G489700.1	Wheat	cytosol	90.65	90.65
CDX86045	Canola	cytosol	91.12	90.28
VIT_08s0040g02490.t01	Wine grape	cytosol	91.12	90.28
GSMUA_Achr10P...	Banana	cytosol	91.12	90.28
KRH23030	Soybean	endoplasmic reticulum	90.65	90.23
Solyc09g010370.2.1	Tomato	extracellular, plastid	90.65	89.81
AT5G59840.1	Thale cress	cytosol	90.65	89.81
GSMUA_Achr8P02620_001	Banana	cytosol	90.65	89.81
PGSC0003DMT400022823	Potato	cytosol	90.65	89.81
AT3G46060.1	Thale cress	cytosol	90.65	89.81
OQU88745	Sorghum	cytosol	94.39	89.38
CDX77855	Canola	cytosol	90.19	89.35
KRH36193	Soybean	endoplasmic reticulum, extracellular	90.19	89.35
VIT_06s0004g04200.t01	Wine grape	cytosol	90.19	89.35
CDX68365	Canola	cytosol	90.19	89.35
PGSC0003DMT400008917	Potato	cytosol	90.19	89.35
PGSC0003DMT400071317	Potato	cytosol	90.19	89.35
CDY71506	Canola	cytosol	90.19	89.35
KRH10292	Soybean	cytosol	89.72	89.3
CDY31592	Canola	cytosol	89.72	88.89
Bra002527.1-P	Field mustard	cytosol	89.72	88.89
Solyc04g011360.2.1	Tomato	plastid	89.72	88.89
Solyc10g086350.1.1	Tomato	cytosol, nucleus	89.72	88.89
Bra006690.1-P	Field mustard	cytosol	89.25	88.43
KRG90563	Soybean	cytosol	89.25	88.43
Bra033830.1-P	Field mustard	cytosol	79.44	88.08
AT3G53610.3	Thale cress	cytosol	88.78	87.96
CDX88725	Canola	cytosol	88.78	87.96
CDX88726	Canola	cytosol	88.78	87.96
CDX80224	Canola	cytosol	87.38	87.79
Bra020282.1-P	Field mustard	cytosol	85.98	85.19
CDY09249	Canola	cytosol	85.51	84.72
EER98157	Sorghum	cytosol	80.37	79.63
CDY34032	Canola	cytosol	52.8	76.87
CDY70243	Canola	cytosol	52.34	73.68
CDY07577	Canola	cytosol	89.25	71.54
HORVU5Hr1G112790.2	Barley	cytosol, extracellular	85.51	70.66
Bra003149.1-P	Field mustard	cytosol	88.78	70.63
CDY52746	Canola	cytosol	88.78	70.63
CDX94925	Canola	cytosol	53.27	69.51
CDX99131	Canola	cytosol	91.59	63.64
EES07529	Sorghum	cytosol	58.41	61.58
EES03124	Sorghum	cytosol	56.54	59.61
EES18842	Sorghum	cytosol	54.67	57.07
EES10859	Sorghum	cytosol	50.47	52.17
Bra038265.1-P	Field mustard	cytosol	91.12	51.86
EES10970	Sorghum	cytoskeleton, cytosol, endoplasmic reticulum	41.12	41.9
EES05332	Sorghum	cytosol	40.65	41.43

Protein Annotations

MapMan:22.8.1.5	Gene3D:3.40.50.300	EntrezGene:8057047	UniProt:C5WV20	EnsemblPlants:EER93195	ProteinID:EER93195
ProteinID:EER93195.1	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0003924	GO:GO:0005488
GO:GO:0005525	GO:GO:0006810	GO:GO:0006904	GO:GO:0008150	GO:GO:0009306	GO:GO:0009987
GO:GO:0016787	GO:GO:0017157	InterPro:P-loop_NTPase	PFAM:PF00071	PRINTS:PR00449	PFscan:PS51419
PANTHER:PTHR24073	PANTHER:PTHR24073:SF646	SMART:SM00173	SMART:SM00174	SMART:SM00175	SMART:SM00176
SMART:SM00177	EnsemblPlantsGene:SORBI_3001G035400	SUPFAM:SSF52540	unigene:Sbi.12618	InterPro:Small_GTP-bd_dom	InterPro:Small_GTPase
TIGRFAMs:TIGR00231	UniParc:UPI0001A82982	RefSeq:XP_002466197.1	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr1:-:2660718..2664113

Molecular Weight (calculated)

23736.2 Da

IEP (calculated)

8.021

GRAVY (calculated)

-0.328

Length

214 amino acids

Sequence
(BLAST)

001: MAAPPARARA DYDYLIKLLL IGDSGVGKSC LLLRFSDGSF TTSFITTIGI DFKIRTVELD GKRIKLQIWD TAGQERFRTI TTAYYRGAMG ILLVYDVTDE
101: SSFNNIRNWI RNIEQHASDN VNKVLVGNKA DMDESKRAVP TSKGQALADE YGIKFFETSA KTNLNVEQVF FSIARDIKQR LSETDSKPED RTIKIKAEGE
201: ADAAAAQKSA CCGS

Best Arabidopsis Sequence Match ( AT3G46060.1 )
(BLAST)

001: MAAPPARARA DYDYLIKLLL IGDSGVGKSC LLLRFSDGSF TTSFITTIGI DFKIRTIELD GKRIKLQIWD TAGQERFRTI TTAYYRGAMG ILLVYDVTDE
101: SSFNNIRNWI RNIEQHASDN VNKILVGNKA DMDESKRAVP TAKGQALADE YGIKFFETSA KTNLNVEEVF FSIGRDIKQR LSDTDSRAEP ATIKISQTDQ
201: AAGAGQATQK SACCGT

Arabidopsis Description

RABE1CRABE1c [Source:UniProtKB/TrEMBL;Acc:A0A178VAR9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.