Factsheet for TraesCS1D01G285200.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 4
mitochondrion 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, secretory
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	nucleus
Predotar:	secretory
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS1A01G124100.1
TraesCS1B01G143000.1
TraesCS1D01G130300.1
TraesCS3A01G104300.1
TraesCS3A01G185700.1
TraesCS3B01G122600.1
TraesCS3B01G215300.1
TraesCS3D01G106500.1
TraesCS3D01G189700.1
TraesCS3D01G373900.1	peroxisome
TraesCS7A01G019000.1
TraesCS7D01G016100.1
TraesCSU01G065800.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G46060.1	TraesCS3D01G373900.1	AT1G29260.1	23297417
AT3G46060.1	TraesCS3A01G185700.1	AT3G06540.1	21798944
AT3G46060.1	TraesCS3B01G215300.1	AT3G06540.1	21798944
AT3G46060.1	TraesCS3D01G189700.1	AT3G06540.1	21798944
AT3G46060.1	TraesCS1A01G124100.1	AT3G13720.1	21798944
AT3G46060.1	TraesCS1B01G143000.1	AT3G13720.1	21798944
AT3G46060.1	TraesCS1D01G130300.1	AT3G13720.1	21798944
AT3G46060.1	TraesCS3A01G104300.1	AT3G13720.1	21798944
AT3G46060.1	TraesCS3B01G122600.1	AT3G13720.1	21798944
AT3G46060.1	TraesCS3D01G106500.1	AT3G13720.1	21798944
AT3G46060.1	TraesCS7A01G019000.1	AT4G25660.1	21798944
AT3G46060.1	TraesCS7D01G016100.1	AT4G25660.1	21798944
AT3G46060.1	TraesCSU01G065800.1	AT4G25660.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1A01G286200.1	Wheat	cytosol	100.0	100.0
TraesCS1B01G295600.1	Wheat	cytosol	100.0	100.0
CDY72056	Canola	cytosol	56.54	96.8
Os05t0461300-01	Rice	plastid	97.2	96.3
Zm00001d038380_P001	Maize	extracellular, plasma membrane	95.79	95.35
EES19652	Sorghum	cytosol	95.79	95.35
Zm00001d010538_P005	Maize	cytosol	95.79	95.35
Solyc06g005350.2.1	Tomato	cytosol	63.08	93.75
GSMUA_Achr10P...	Banana	cytosol	94.39	93.52
GSMUA_Achr11P...	Banana	cytosol	94.39	93.52
GSMUA_Achr9P03220_001	Banana	cytosol	93.93	93.06
PGSC0003DMT400040138	Potato	cytosol	92.99	92.13
GSMUA_Achr6P34270_001	Banana	cytosol	92.52	91.67
GSMUA_AchrUn_...	Banana	cytosol	92.52	91.67
Solyc11g073050.1.1	Tomato	endoplasmic reticulum	92.06	91.2
KRH29838	Soybean	endoplasmic reticulum	91.12	91.12
KRH24835	Soybean	cytosol	90.65	90.65
GSMUA_Achr8P02620_001	Banana	cytosol	91.12	90.28
Solyc09g010370.2.1	Tomato	extracellular, plastid	90.65	89.81
PGSC0003DMT400022823	Potato	cytosol	90.65	89.81
VIT_13s0019g00520.t01	Wine grape	extracellular	90.65	89.81
KRH70501	Soybean	endoplasmic reticulum	90.65	89.81
VIT_08s0040g02490.t01	Wine grape	cytosol	90.65	89.81
KRH01606	Soybean	endoplasmic reticulum	90.65	89.81
CDY30926	Canola	cytosol	90.19	89.35
Bra019475.1-P	Field mustard	cytosol	90.19	89.35
GSMUA_Achr10P...	Banana	cytosol	89.72	88.89
PGSC0003DMT400049296	Potato	cytosol	89.72	88.89
CDX86045	Canola	cytosol	89.72	88.89
VIT_06s0004g04200.t01	Wine grape	cytosol	89.72	88.89
AT3G46060.1	Thale cress	cytosol	89.25	88.43
KRG90563	Soybean	cytosol	89.25	88.43
KRH36193	Soybean	endoplasmic reticulum, extracellular	89.25	88.43
PGSC0003DMT400071317	Potato	cytosol	89.25	88.43
AT5G59840.1	Thale cress	cytosol	89.25	88.43
CDY71506	Canola	cytosol	89.25	88.43
CDX68365	Canola	cytosol	89.25	88.43
CDX77855	Canola	cytosol	89.25	88.43
KRH10292	Soybean	cytosol	88.78	88.37
KRH23030	Soybean	endoplasmic reticulum	88.78	88.37
Bra002527.1-P	Field mustard	cytosol	88.78	87.96
CDY31592	Canola	cytosol	88.78	87.96
PGSC0003DMT400008917	Potato	cytosol	88.78	87.96
Solyc04g011360.2.1	Tomato	plastid	88.78	87.96
TraesCS5D01G489700.1	Wheat	cytosol	87.85	87.85
AT3G53610.3	Thale cress	cytosol	88.32	87.5
Bra033830.1-P	Field mustard	cytosol	78.5	87.05
Solyc10g086350.1.1	Tomato	cytosol, nucleus	87.85	87.04
Bra006690.1-P	Field mustard	cytosol	87.85	87.04
CDX88725	Canola	cytosol	87.38	86.57
CDX88726	Canola	cytosol	87.38	86.57
CDX80224	Canola	cytosol	85.98	86.39
Bra020282.1-P	Field mustard	cytosol	85.51	84.72
TraesCS3D01G350000.3	Wheat	cytosol	93.93	84.45
HORVU1Hr1G072070.1	Barley	cytosol	88.78	84.44
CDY09249	Canola	cytosol	85.05	84.26
CDY34032	Canola	cytosol	52.8	76.87
CDY70243	Canola	cytosol	52.34	73.68
CDY07577	Canola	cytosol	88.32	70.79
CDY52746	Canola	cytosol	87.85	69.89
Bra003149.1-P	Field mustard	cytosol	87.85	69.89
CDX94925	Canola	cytosol	53.27	69.51
CDX99131	Canola	cytosol	90.19	62.66
TraesCS3D01G056500.1	Wheat	golgi	56.54	59.61
TraesCS3D01G056600.1	Wheat	plastid	55.61	58.62
TraesCS3D01G206600.1	Wheat	cytosol	55.14	53.39
TraesCS1D01G013200.1	Wheat	cytosol, extracellular	50.47	52.94
TraesCS2D01G309200.2	Wheat	cytosol	50.93	51.17
Bra038265.1-P	Field mustard	cytosol	89.72	51.06
TraesCS2D01G331300.1	Wheat	golgi, plastid	41.59	42.38
TraesCS6D01G188500.1	Wheat	golgi	41.12	41.9
TraesCS3D01G495900.1	Wheat	cytosol	30.37	36.31
TraesCS5D01G264100.1	Wheat	cytosol	34.11	34.43

Protein Annotations

MapMan:22.8.1.5	Gene3D:3.40.50.300	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0003924
GO:GO:0005488	GO:GO:0005525	GO:GO:0016787	InterPro:P-loop_NTPase	PFAM:PF00071	PRINTS:PR00449
PFscan:PS51419	PANTHER:PTHR24073	PANTHER:PTHR24073:SF642	SMART:SM00173	SMART:SM00174	SMART:SM00175
SMART:SM00176	SMART:SM00177	SUPFAM:SSF52540	InterPro:Small_GTP-bd_dom	InterPro:Small_GTPase	TIGRFAMs:TIGR00231
EnsemblPlantsGene:TraesCS1D01G285200	EnsemblPlants:TraesCS1D01G285200.1	TIGR:cd01867	SEG:seg	:	:

Description

No Description!

Coordinates

chr1D:-:383314588..383316802

Molecular Weight (calculated)

23674.1 Da

IEP (calculated)

8.021

GRAVY (calculated)

-0.308

Length

214 amino acids

Sequence
(BLAST)

001: MAAPPARARA DYDYLIKLLL IGDSGVGKSC LLLRFSDGSF TTSFITTIGI DFKIRTIELD QKRIKLQIWD TAGQERFRTI TTAYYRGAMG ILLVYDVTDE
101: SSFNNIRNWI RNIEQHASDN VNKILIGNKA DMDESKRAVP TAKGQALADE YGIKFFETSA KTNLNVEQVF FSIARDIKQR LAETDSKPED KTIKINKAEG
201: GDAPAASGSA CCGS

Best Arabidopsis Sequence Match ( AT3G53610.1 )
(BLAST)

001: MAAPPARARA DYDYLIKLLL IGDSGVGKSC LLLRFSDGSF TTSFITTIGI DFKIRTIELD GKRIKLQIWD TAGQERFRTI TTAYYRGAMG ILLVYDVTDE
101: SSFNNIRNWI RNIEQHASDS VNKILVGNKA DMDESKRAVP KSKGQALADE YGMKFFETSA KTNLNVEEVF FSIAKDIKQR LADTDARAEP QTIKINQSDQ
201: GAGTSQATQK SACCGT

Arabidopsis Description

RABE1ARas-related protein RABE1a [Source:UniProtKB/Swiss-Prot;Acc:O24466]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.