Factsheet for Bra029803.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 1
cytosol 4
mitochondrion 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid, secretory
BaCelLo:	plastid
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	cytosol
Predotar:	secretory
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY54609	Canola	cytosol	95.58	99.08
CDY41572	Canola	cytosol	93.81	97.25
AT3G09900.1	Thale cress	cytosol	91.15	94.5
Bra005767.1-P	Field mustard	cytosol	89.82	93.55
VIT_08s0007g04750.t01	Wine grape	cytosol	81.86	85.65
Bra002527.1-P	Field mustard	cytosol	79.65	83.33
Bra006690.1-P	Field mustard	cytosol	79.2	82.87
Bra019475.1-P	Field mustard	cytosol	78.76	82.41
Bra033830.1-P	Field mustard	cytosol	68.58	80.31
Bra020282.1-P	Field mustard	cytosol	76.55	80.09
EER98157	Sorghum	cytosol	73.45	76.85
Bra003149.1-P	Field mustard	cytosol	79.2	66.54
Bra012658.1-P	Field mustard	cytosol	52.65	58.91
Bra024956.1-P	Field mustard	cytosol	52.21	58.42
Bra017497.1-P	Field mustard	cytosol	51.77	57.92
Bra022113.1-P	Field mustard	cytosol	51.77	57.92
Os07t0195100-01	Rice	plasma membrane	69.91	57.88
Bra038676.1-P	Field mustard	vacuole	52.21	57.28
Bra001418.1-P	Field mustard	cytosol, extracellular	51.33	56.31
Bra038265.1-P	Field mustard	cytosol	78.32	47.07
Bra040162.1-P	Field mustard	cytosol	51.33	42.34
Bra011645.1-P	Field mustard	cytosol	38.94	41.71
Bra017733.1-P	Field mustard	cytosol	38.5	41.23
Bra021065.1-P	Field mustard	cytosol	37.61	40.48
Bra026231.1-P	Field mustard	cytosol	37.61	40.28

Protein Annotations

MapMan:22.8.1.5	Gene3D:3.40.50.300	EnsemblPlantsGene:Bra029803	EnsemblPlants:Bra029803.1	EnsemblPlants:Bra029803.1-P	GO:GO:0000166
GO:GO:0003674	GO:GO:0003824	GO:GO:0003924	GO:GO:0005488	GO:GO:0005525	GO:GO:0005575
GO:GO:0005623	GO:GO:0005886	GO:GO:0016020	GO:GO:0016787	UniProt:M4ELY3	InterPro:P-loop_NTPase
PFAM:PF00071	PRINTS:PR00449	PFscan:PS51419	PANTHER:PTHR24073	PANTHER:PTHR24073:SF646	SMART:SM00173
SMART:SM00174	SMART:SM00175	SMART:SM00176	SUPFAM:SSF52540	InterPro:Small_GTP-bd_dom	InterPro:Small_GTPase
TIGRFAMs:TIGR00231	UniParc:UPI0002547A4A	SEG:seg	:	:	:

Description

AT3G09900 (E=1e-091) ATRABE1E, ATRAB8E | ATRABE1E (ARABIDOPSIS RAB GTPASE HOMOLOG E1E); GTP binding

Coordinates

chrA05:-:22219133..22220651

Molecular Weight (calculated)

25212.9 Da

IEP (calculated)

8.760

GRAVY (calculated)

-0.369

Length

226 amino acids

Sequence
(BLAST)

001: MAAAPGRARS DYDYLVKLLL IGDSGNSNFF TLSVGKSCLL LRFSDDTFTT SFITTIGIDF KIRTVELDGK RIKLQIWDTA GQERFRTITT AYYRGAMGIL
101: LVYDVTDESS FNNIRNWMKN IEQHASDSVN RILVGNKADM DESKRAIPTS KGQALADEYG IKFFETSAKT NLNVEQVFMS IAKDIKQRLT ESDTKAEPQG
201: IKIKKQESSK ASSSSTTEKS ACCSYV

Best Arabidopsis Sequence Match ( AT3G09900.1 )
(BLAST)

001: MAVAPARARS DYDYLIKLLL IGDSGVGKSC LLLRFSDDTF TTSFITTIGI DFKIRTVELD GKRIKLQIWD TAGQERFRTI TTAYYRGAMG ILLVYDVTDE
101: SSFNNIRNWM KNIEQHASDS VNKILVGNKA DMDESKRAVP TSKGQALADE YGIKFFETSA KTNQNVEQVF LSIAKDIKQR LTESDTKAEP QGIKITKQDA
201: NKASSSSTNE KSACCSYV

Arabidopsis Description

RABE1ERas-related protein RABE1e [Source:UniProtKB/Swiss-Prot;Acc:Q9SF91]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.