Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane, golgi, plastid
Predictor Summary:
Predictor Summary:
- golgi 2
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 2
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| OQU78555 | Sorghum | extracellular | 73.5 | 77.83 |
| Os04t0367400-02 | Rice | plasma membrane | 51.28 | 56.34 |
| VIT_08s0007g01720.t01 | Wine grape | plasma membrane | 32.48 | 36.36 |
| PGSC0003DMT400052428 | Potato | cytosol, plasma membrane, vacuole | 32.48 | 36.36 |
| KRH75801 | Soybean | plasma membrane | 31.62 | 35.41 |
| Zm00001d042846_P001 | Maize | plasma membrane | 31.62 | 35.24 |
| GSMUA_Achr10P... | Banana | plasma membrane | 34.62 | 35.22 |
| Solyc09g013110.2.1 | Tomato | cytosol, plasma membrane, vacuole | 31.2 | 34.93 |
| KRH66004 | Soybean | endoplasmic reticulum, golgi, plasma membrane | 31.2 | 34.93 |
| CDX67589 | Canola | golgi, plasma membrane, vacuole | 29.91 | 34.48 |
| CDY51584 | Canola | plasma membrane | 29.91 | 34.48 |
| Bra003171.1-P | Field mustard | plasma membrane | 29.49 | 33.99 |
| CDX73507 | Canola | cytosol, golgi, plasma membrane | 29.49 | 33.66 |
| GSMUA_Achr8P02250_001 | Banana | cytosol, mitochondrion, peroxisome, plasma membrane | 35.47 | 33.6 |
| AT3G54120.1 | Thale cress | cytosol, plasma membrane, vacuole | 29.06 | 33.5 |
| Zm00001d026575_P001 | Maize | mitochondrion, peroxisome, plasma membrane, plastid, vacuole | 28.21 | 33.33 |
| CDX78209 | Canola | golgi, plasma membrane, vacuole | 28.63 | 32.68 |
| Bra007047.1-P | Field mustard | golgi, plasma membrane, vacuole | 28.63 | 32.68 |
| Zm00001d001901_P002 | Maize | plasma membrane | 26.92 | 31.82 |
| Zm00001d020729_P001 | Maize | plasma membrane | 11.97 | 29.47 |
| GSMUA_Achr6P33560_001 | Banana | plasma membrane | 31.62 | 28.03 |
| Zm00001d038910_P001 | Maize | plasma membrane | 25.64 | 26.43 |
| Zm00001d047517_P001 | Maize | peroxisome | 25.21 | 25.88 |
| Zm00001d011631_P001 | Maize | golgi, peroxisome, plasma membrane | 23.5 | 24.89 |
| Zm00001d008590_P001 | Maize | plastid | 14.1 | 24.81 |
| Zm00001d020229_P001 | Maize | plasma membrane | 15.81 | 24.34 |
| Zm00001d016041_P001 | Maize | extracellular | 23.5 | 23.91 |
| Zm00001d037453_P001 | Maize | cytosol, peroxisome, plasma membrane | 24.79 | 22.22 |
| Zm00001d043551_P003 | Maize | plasma membrane | 23.5 | 21.4 |
| Zm00001d012776_P001 | Maize | extracellular | 23.08 | 21.34 |
| Zm00001d038768_P001 | Maize | extracellular, mitochondrion | 22.65 | 20.87 |
| Zm00001d008982_P001 | Maize | cytosol, nucleus, plasma membrane | 24.36 | 20.43 |
| Zm00001d037848_P008 | Maize | endoplasmic reticulum, nucleus, peroxisome | 20.94 | 19.44 |
| Zm00001d039316_P001 | Maize | cytosol, nucleus, plasma membrane | 23.93 | 18.3 |
| Zm00001d034313_P001 | Maize | cytosol, nucleus, plasma membrane | 19.23 | 18.15 |
| Zm00001d018781_P001 | Maize | extracellular, mitochondrion | 18.8 | 18.11 |
Protein Annotations
| EntrezGene:100284399 | MapMan:13.7.2.1 | UniProt:A0A1D6MEI1 | ProteinID:AQK89052.1 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005783 | GO:GO:0005789 | GO:GO:0016020 | GO:GO:0016021 |
| InterPro:IPR003388 | PFAM:PF02453 | PFscan:PS50845 | PANTHER:PTHR10994 | PANTHER:PTHR10994:SF65 | InterPro:Reticulon |
| TMHMM:TMhelix | UniParc:UPI000844C1D4 | EnsemblPlantsGene:Zm00001d039213 | EnsemblPlants:Zm00001d039213_P001 | EnsemblPlants:Zm00001d039213_T001 | SEG:seg |
Description
Seed maturation protein
Coordinates
chr6:+:172671146..172672496
Molecular Weight (calculated)
24911.2 Da
IEP (calculated)
6.488
GRAVY (calculated)
0.519
Length
234 amino acids
Sequence
(BLAST)
(BLAST)
001: MVVDAGVGVG GGGGGAGTCA VGGFAVWDVL LWRRGRADVS ACLLAGTVSS WLLLYGGYTL VSLASNVLLL LLTVLFLWAK AARLLNRPQP PVPELRVPQQ
101: AVDEAAALLR SALDAASDAF RDIALGRDSL LFYRAFLCLW SVSIVGSVTD FPTACYASVV AALTIPALYH RHQECIATYL SFAYMNLRMY EMARGSSGTG
201: ALPAEVCPPP WLEDASDISS NLRNVLTWAA ARWA
101: AVDEAAALLR SALDAASDAF RDIALGRDSL LFYRAFLCLW SVSIVGSVTD FPTACYASVV AALTIPALYH RHQECIATYL SFAYMNLRMY EMARGSSGTG
201: ALPAEVCPPP WLEDASDISS NLRNVLTWAA ARWA
001: MGDSVSSSSR VSVHQSLGAG SVADLLLWRN RTGAVILLIS STGFWFLFER AGYNLLSFVS NVLLLLVAIF FLWAKSATVL NRPLPPVPNM EIPEEFANKA
101: ADDLRVWINY VLSIASDITI ARNPIRLLQV SLVLWAISYV GTLINSLTLV YIGVLLSLSF PIVYEKYQDH IDEKVNSTSK FVRNISRKFP LPINKEKKHQ
101: ADDLRVWINY VLSIASDITI ARNPIRLLQV SLVLWAISYV GTLINSLTLV YIGVLLSLSF PIVYEKYQDH IDEKVNSTSK FVRNISRKFP LPINKEKKHQ
Arabidopsis Description
Reticulon-like protein [Source:UniProtKB/TrEMBL;Acc:A0A1I9LL94]
SUBAcon: [plasma membrane]
SUBAcon: [plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.