Subcellular Localization
min:
: max
Winner_takes_all: peroxisome
Predictor Summary:
Predictor Summary:
- peroxisome 2
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 2
- golgi 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| EER92307 | Sorghum | peroxisome | 94.3 | 94.3 |
| Os03t0336600-02 | Rice | plasma membrane | 82.02 | 80.95 |
| TraesCS4A01G135900.1 | Wheat | peroxisome | 78.95 | 79.3 |
| TraesCS4D01G171300.2 | Wheat | peroxisome | 78.51 | 78.85 |
| TraesCS4B01G169100.2 | Wheat | cytosol, peroxisome, vacuole | 78.07 | 78.41 |
| HORVU4Hr1G050020.1 | Barley | plastid | 78.95 | 69.5 |
| Solyc06g049060.2.1 | Tomato | mitochondrion, plasma membrane | 54.82 | 65.79 |
| GSMUA_Achr3P09820_001 | Banana | cytosol, peroxisome, plasma membrane | 65.79 | 65.22 |
| KRG93546 | Soybean | plasma membrane | 50.88 | 58.29 |
| KRH18469 | Soybean | plasma membrane | 49.56 | 57.07 |
| PGSC0003DMT400042905 | Potato | cytosol, peroxisome, plasma membrane | 59.21 | 56.72 |
| Bra034153.1-P | Field mustard | plasma membrane | 51.75 | 52.91 |
| CDY36282 | Canola | plasma membrane | 51.32 | 52.47 |
| Bra029878.1-P | Field mustard | cytosol, peroxisome, plasma membrane | 51.75 | 49.37 |
| CDY00975 | Canola | cytosol, endoplasmic reticulum, peroxisome | 51.32 | 48.95 |
| CDY08567 | Canola | cytosol | 51.32 | 48.55 |
| AT3G10915.7 | Thale cress | plasma membrane | 51.75 | 47.01 |
| Zm00001d026575_P001 | Maize | mitochondrion, peroxisome, plasma membrane, plastid, vacuole | 32.46 | 37.37 |
| Zm00001d001901_P002 | Maize | plasma membrane | 31.14 | 35.86 |
| Zm00001d020729_P001 | Maize | plasma membrane | 13.6 | 32.63 |
| Zm00001d016041_P001 | Maize | extracellular | 32.02 | 31.74 |
| Zm00001d042846_P001 | Maize | plasma membrane | 28.51 | 30.95 |
| Zm00001d011631_P001 | Maize | golgi, peroxisome, plasma membrane | 29.39 | 30.32 |
| Zm00001d037453_P001 | Maize | cytosol, peroxisome, plasma membrane | 33.77 | 29.5 |
| VIT_13s0067g02960.t01 | Wine grape | endoplasmic reticulum, peroxisome, plasma membrane | 41.67 | 29.05 |
| Zm00001d043551_P003 | Maize | plasma membrane | 32.46 | 28.79 |
| Zm00001d038910_P001 | Maize | plasma membrane | 28.07 | 28.19 |
| Zm00001d012776_P001 | Maize | extracellular | 31.14 | 28.06 |
| Zm00001d008982_P001 | Maize | cytosol, nucleus, plasma membrane | 33.77 | 27.6 |
| Zm00001d038768_P001 | Maize | extracellular, mitochondrion | 29.82 | 26.77 |
| Zm00001d037848_P008 | Maize | endoplasmic reticulum, nucleus, peroxisome | 28.95 | 26.19 |
| Zm00001d020229_P001 | Maize | plasma membrane | 17.11 | 25.66 |
| Zm00001d039213_P001 | Maize | golgi, plasma membrane, plastid | 25.88 | 25.21 |
| Zm00001d018781_P001 | Maize | extracellular, mitochondrion | 26.75 | 25.1 |
| Zm00001d034313_P001 | Maize | cytosol, nucleus, plasma membrane | 27.19 | 25.0 |
| Zm00001d039316_P001 | Maize | cytosol, nucleus, plasma membrane | 32.89 | 24.51 |
| Zm00001d008590_P001 | Maize | plastid | 12.72 | 21.8 |
Protein Annotations
| EntrezGene:100283018 | MapMan:13.7.2.1 | ProteinID:AQL06815.1 | UniProt:B6TDV5 | EMBL:BT063100 | EMBL:EU963170 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005783 | GO:GO:0005789 |
| GO:GO:0016020 | GO:GO:0016021 | InterPro:IPR003388 | PFAM:PF02453 | PFscan:PS50845 | PANTHER:PTHR10994 |
| PANTHER:PTHR10994:SF67 | InterPro:Reticulon | TMHMM:TMhelix | UniParc:UPI000182C54A | EnsemblPlantsGene:Zm00001d047517 | EnsemblPlants:Zm00001d047517_P001 |
| EnsemblPlants:Zm00001d047517_T001 | SEG:seg | : | : | : | : |
Description
Reticulon-like protein B16
Coordinates
chr9:+:133210755..133213214
Molecular Weight (calculated)
25135.0 Da
IEP (calculated)
9.818
GRAVY (calculated)
0.351
Length
228 amino acids
Sequence
(BLAST)
(BLAST)
001: MDAAGGVEAA ANGGIEGSAD PCSSGGAGGY RRSVHQIAGG GKAADIILWR RARVTFGVIF GATLAWWLFE KSGLSLLTIC SDILLILIVL QFIRVKIAGL
101: LDRQPRPLPE LVLSEEMVSN AAASFRVKVN SMLMIAHDIT LGKDFRLFFQ VVIVLWLLSV IGNFCSSITL AYIGTVALVT MPALYNKYQR PVDRYAGMVY
201: RNISRHYKIV DENVISRLPR RFIRDKED
101: LDRQPRPLPE LVLSEEMVSN AAASFRVKVN SMLMIAHDIT LGKDFRLFFQ VVIVLWLLSV IGNFCSSITL AYIGTVALVT MPALYNKYQR PVDRYAGMVY
201: RNISRHYKIV DENVISRLPR RFIRDKED
001: MDSLSDIDGD FDGRNEGGSS SDYRLLGRQI TVHQFMGGGK AADLLLWRRR HLSLGVIIIS TVAWLIFEFS GLPFLSVSSD VLLIVIMISF VHARVSAFRN
101: RQLHSLPELV LSEEMVNSAA ASFRIKLNHL LVMAHDVTVG NDFRLFFKVV ICLWLLSAIG SYISLCTLLY IGTILSVTIP ALYSKYQSKV DKCCGTIHRR
201: LSHHYKIVDE NVISRLSWSL SKDKDS
101: RQLHSLPELV LSEEMVNSAA ASFRIKLNHL LVMAHDVTVG NDFRLFFKVV ICLWLLSAIG SYISLCTLLY IGTILSVTIP ALYSKYQSKV DKCCGTIHRR
201: LSHHYKIVDE NVISRLSWSL SKDKDS
Arabidopsis Description
Reticulon-like protein [Source:UniProtKB/TrEMBL;Acc:A0A1I9LP93]
SUBAcon: [peroxisome,cytosol,plasma membrane]
SUBAcon: [peroxisome,cytosol,plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.