Factsheet for VIT_13s0067g02960.t01

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, plasma membrane, peroxisome

Predictor Summary:

nucleus 2
endoplasmic reticulum 2
extracellular 1
vacuole 1
plasma membrane 2
golgi 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum, peroxisome, plasma membrane
Any Predictor:	nucleus, peroxisome, secretory
BaCelLo:	nucleus
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	nucleus
PProwler:	secretory
WoLF PSORT:	plasma membrane
YLoc:	peroxisome

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc06g049060.2.1	Tomato	mitochondrion, plasma membrane	31.8	54.74
PGSC0003DMT400042905	Potato	cytosol, peroxisome, plasma membrane	35.47	48.74
GSMUA_Achr3P09820_001	Banana	cytosol, peroxisome, plasma membrane	33.95	48.26
KRG93546	Soybean	plasma membrane	28.44	46.73
KRH18469	Soybean	plasma membrane	27.52	45.45
Bra034153.1-P	Field mustard	plasma membrane	28.75	42.15
EER92307	Sorghum	peroxisome	29.36	42.11
Zm00001d047517_P001	Maize	peroxisome	29.05	41.67
TraesCS4A01G135900.1	Wheat	peroxisome	28.75	41.41
TraesCS4D01G171300.2	Wheat	peroxisome	28.75	41.41
Os03t0336600-02	Rice	plasma membrane	29.05	41.13
Bra029878.1-P	Field mustard	cytosol, peroxisome, plasma membrane	29.97	41.0
TraesCS4B01G169100.2	Wheat	cytosol, peroxisome, vacuole	28.44	40.97
CDY36282	Canola	plasma membrane	27.83	40.81
CDY08567	Canola	cytosol	29.97	40.66
CDY00975	Canola	cytosol, endoplasmic reticulum, peroxisome	29.66	40.59
AT3G10915.7	Thale cress	plasma membrane	29.97	39.04
HORVU4Hr1G050020.1	Barley	plastid	29.05	36.68
VIT_08s0007g01720.t01	Wine grape	plasma membrane	22.32	34.93
VIT_03s0180g00170.t01	Wine grape	endoplasmic reticulum, plasma membrane, vacuole	19.57	30.92
VIT_17s0000g03260.t01	Wine grape	plasma membrane	16.21	25.0
VIT_02s0025g00590.t01	Wine grape	mitochondrion	4.28	23.33
VIT_02s0025g00640.t01	Wine grape	cytosol, nucleus, plasma membrane	17.43	22.62
VIT_15s0046g01760.t01	Wine grape	cytosol, peroxisome, plasma membrane	16.82	21.57
VIT_16s0050g01790.t01	Wine grape	cytosol, nucleus, plasma membrane	15.29	19.68
VIT_12s0028g01090.t01	Wine grape	cytosol, peroxisome, plasma membrane	14.37	18.95
VIT_00s0253g00030.t01	Wine grape	endoplasmic reticulum, plasma membrane, vacuole	11.31	17.29
VIT_01s0011g04030.t01	Wine grape	cytosol	16.82	14.71
VIT_07s0031g02730.t01	Wine grape	golgi, mitochondrion, nucleus, plasma membrane	7.34	13.33

Protein Annotations

MapMan:13.7.2.1	ProteinID:CCB49790	ProteinID:CCB49790.1	UniProt:F6HC78	EMBL:FN595514	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005783	GO:GO:0005789	GO:GO:0016020
GO:GO:0016021	InterPro:IPR003388	PFAM:PF02453	PFscan:PS50845	PANTHER:PTHR10994	PANTHER:PTHR10994:SF67
InterPro:Reticulon	TMHMM:TMhelix	UniParc:UPI000210A3DC	ArrayExpress:VIT_13s0067g02960	EnsemblPlantsGene:VIT_13s0067g02960	EnsemblPlants:VIT_13s0067g02960.t01
SEG:seg	:	:	:	:	:

Description

Reticulon-like protein [Source:UniProtKB/TrEMBL;Acc:F6HC78]

Coordinates

chr13:-:1583942..1588478

Molecular Weight (calculated)

36392.9 Da

IEP (calculated)

9.214

GRAVY (calculated)

-0.093

Length

327 amino acids

Sequence
(BLAST)

001: MDSSEDPSNA CVDGDASTSG GPGYRLFDRR SSIHQIMGGG KAADVLLWKR RRVSCGTIVV ATVAWILFER SGLSFLSICS DVLLILIVVL FLRANYAAFR
101: NKQLKSLPEL ELSEEMVNSV AGSFRVKINY LLLMAHDITL GKDFRLFFKG GCSKGGSFLQ VSEDGLAQQG FSQVSETGSE GRVAAASFLY TFAAKVSTAN
201: DVSTQSHLSL GKCSWPWRKR SGDEEMRFVI HVADCKRSIT RNWQMNVRLM IILHCVTPAR QTEETNPARE MGSFHVCPTT AENNATFKFN IRLTRVFHRS
301: RILACNMDRC PLPEQGISTI QQRMLKS

Best Arabidopsis Sequence Match ( AT3G10915.1 )
(BLAST)

001: MDSLSDIDGD FDGRNEGGSS SDYRLLGRQI TVHQFMGGGK AADLLLWRRR HLSLGVIIIS TVAWLIFEFS GLPFLSVSSD VLLIVIMISF VHARVSAFRN
101: RQLHSLPELV LSEEMVNSAA ASFRIKLNHL LVMAHDVTVG NDFRLFFKVM KLTHSETHDD VE

Arabidopsis Description

Reticulon-like protein [Source:UniProtKB/TrEMBL;Acc:A0A1I9LP93]
SUBAcon: [peroxisome,cytosol,plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.