Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane, mitochondrion
Predictor Summary:
Predictor Summary:
- plastid 1
- mitochondrion 3
- golgi 2
- plasma membrane 4
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400042905 | Potato | cytosol, peroxisome, plasma membrane | 97.89 | 78.15 |
| KRG93546 | Soybean | plasma membrane | 70.53 | 67.34 |
| KRH18469 | Soybean | plasma membrane | 68.95 | 66.16 |
| GSMUA_Achr3P09820_001 | Banana | cytosol, peroxisome, plasma membrane | 67.89 | 56.09 |
| Zm00001d047517_P001 | Maize | peroxisome | 65.79 | 54.82 |
| EER92307 | Sorghum | peroxisome | 65.79 | 54.82 |
| Os03t0336600-02 | Rice | plasma membrane | 65.79 | 54.11 |
| Bra034153.1-P | Field mustard | plasma membrane | 63.16 | 53.81 |
| CDY36282 | Canola | plasma membrane | 62.63 | 53.36 |
| TraesCS4A01G135900.1 | Wheat | peroxisome | 63.68 | 53.3 |
| TraesCS4D01G171300.2 | Wheat | peroxisome | 63.16 | 52.86 |
| TraesCS4B01G169100.2 | Wheat | cytosol, peroxisome, vacuole | 63.16 | 52.86 |
| AT3G10915.7 | Thale cress | plasma membrane | 65.79 | 49.8 |
| Bra029878.1-P | Field mustard | cytosol, peroxisome, plasma membrane | 62.63 | 49.79 |
| CDY08567 | Canola | cytosol | 62.63 | 49.38 |
| CDY00975 | Canola | cytosol, endoplasmic reticulum, peroxisome | 62.11 | 49.37 |
| HORVU4Hr1G050020.1 | Barley | plastid | 63.16 | 46.33 |
| Solyc09g013110.2.1 | Tomato | cytosol, plasma membrane, vacuole | 41.05 | 37.32 |
| Solyc01g107620.2.1 | Tomato | plasma membrane | 38.42 | 33.33 |
| VIT_13s0067g02960.t01 | Wine grape | endoplasmic reticulum, peroxisome, plasma membrane | 54.74 | 31.8 |
| Solyc06g036430.2.1 | Tomato | cytosol, nucleus, plasma membrane | 38.95 | 29.25 |
| Solyc07g044880.2.1 | Tomato | mitochondrion | 21.58 | 28.87 |
| Solyc12g006290.1.1 | Tomato | nucleus | 34.74 | 28.33 |
| Solyc03g007740.2.1 | Tomato | nucleus | 36.84 | 27.45 |
| Solyc03g119190.2.1 | Tomato | plasma membrane | 31.58 | 27.4 |
| Solyc10g011870.2.1 | Tomato | cytosol, nucleus, plasma membrane | 37.89 | 27.38 |
| Solyc09g055250.2.1 | Tomato | cytosol, endoplasmic reticulum, peroxisome | 34.74 | 27.05 |
| Solyc01g095200.2.1 | Tomato | plastid | 37.37 | 27.0 |
| Solyc08g081730.2.1 | Tomato | endoplasmic reticulum, plastid | 37.89 | 26.67 |
| Solyc05g008890.2.1 | Tomato | plasma membrane | 30.0 | 25.79 |
| Solyc06g082740.2.1 | Tomato | nucleus | 31.05 | 25.76 |
| Solyc02g090370.2.1 | Tomato | plasma membrane | 22.11 | 22.46 |
Protein Annotations
| MapMan:13.7.2.1 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005783 |
| GO:GO:0005789 | GO:GO:0016020 | GO:GO:0016021 | InterPro:IPR003388 | UniProt:K4C5F2 | PFAM:PF02453 |
| PFscan:PS50845 | PANTHER:PTHR10994 | PANTHER:PTHR10994:SF67 | InterPro:Reticulon | EnsemblPlantsGene:Solyc06g049060.2 | EnsemblPlants:Solyc06g049060.2.1 |
| TMHMM:TMhelix | UniParc:UPI0002766924 | SEG:seg | : | : | : |
Description
Reticulon-like protein B16 [Source:Projected from Arabidopsis thaliana (AT3G10915) UniProtKB/Swiss-Prot;Acc:Q8GYH6]
Coordinates
chr6:-:32336694..32343138
Molecular Weight (calculated)
21704.1 Da
IEP (calculated)
10.383
GRAVY (calculated)
0.510
Length
190 amino acids
Sequence
(BLAST)
(BLAST)
001: MGGGKAADVI LWRRRRVSFG IIVAATVAWI IFEYSELPFL SVSSDVLLIL IVLLFLRANY AAFRKKQLPA LPELVLSEEM VNNAAASFRV KMNYMLLMAH
101: DITLGKDFKL FFKVVIVLWL LSVIGSVISF FTLAYIGTIV FITVPALYNK FEDHVDRYAG KIHRQFSRHY KIVDESISRL PRSISKNKEL
101: DITLGKDFKL FFKVVIVLWL LSVIGSVISF FTLAYIGTIV FITVPALYNK FEDHVDRYAG KIHRQFSRHY KIVDESISRL PRSISKNKEL
001: MDSLSDIDGD FDGRNEGGSS SDYRLLGRQI TVHQFMGGGK AADLLLWRRR HLSLGVIIIS TVAWLIFEFS GLPFLSVSSD VLLIVIMISF VHARVSAFRN
101: RQLHSLPELV LSEEMVNSAA ASFRIKLNHL LVMAHDVTVG NDFRLFFKVV ICLWLLSAIG SYISLCTLLY IGTILSVTIP ALYSKYQSKV DKCCGTIHRR
201: LSHHYKIVDE NVISRLSWSL SKDKDS
101: RQLHSLPELV LSEEMVNSAA ASFRIKLNHL LVMAHDVTVG NDFRLFFKVV ICLWLLSAIG SYISLCTLLY IGTILSVTIP ALYSKYQSKV DKCCGTIHRR
201: LSHHYKIVDE NVISRLSWSL SKDKDS
Arabidopsis Description
Reticulon-like protein [Source:UniProtKB/TrEMBL;Acc:A0A1I9LP93]
SUBAcon: [cytosol,plasma membrane,peroxisome]
SUBAcon: [cytosol,plasma membrane,peroxisome]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.