Factsheet for Solyc08g081730.2.1

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, plastid

Predictor Summary:

nucleus 3
cytosol 1
plasma membrane 3
plastid 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum, plastid
Any Predictor:	cytosol, nucleus, plastid, secretory
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus, plasma membrane, plastid
PProwler:	secretory
WoLF PSORT:	plasma membrane
YLoc:	nucleus

plastid: 22908117
endoplasmic reticulum: 29145071

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

msms PMID: 29145071 doi

P Ibort, H Imai, M Uemura, R Aroca

Departamento de Microbiología del Suelo y Sistemas Simbióticos, Estación Experimental del Zaidín (EEZ-CSIC), Profesor Albareda 1, 18008 Granada, Spain. Electronic address: pablo.ibort@eez.csic.es., Departamento de Microbiología del Suelo y Sistemas Simbióticos, Estación Experimental del Zaidín (EEZ-CSIC), Profesor Albareda 1, 18008 Granada, Spain. Electronic address: raroca@eez.csic.es., United Graduate School of Agricultural Sciences, Iwate University, Morioka, Iwate 020-8550, Japan; Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, 3-18-8 Ueda, Morioka, Iwate 020-8550, Japan. Electronic address: u0414004@iwate-u.ac.jp., United Graduate School of Agricultural Sciences, Iwate University, Morioka, Iwate 020-8550, Japan; Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, 3-18-8 Ueda, Morioka, Iwate 020-8550, Japan. Electronic address: uemura@iwate-u.ac.jp.

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc01g005320.2.1
Solyc01g008820.2.1
Solyc02g063390.2.1
Solyc02g068130.2.1
Solyc02g087060.2.1
Solyc02g089780.2.1
Solyc02g094140.2.1
Solyc03g045090.2.1
Solyc03g082600.2.1
Solyc03g121460.1.1
Solyc04g049180.2.1
Solyc04g072110.2.1
Solyc06g005350.2.1
Solyc06g073270.2.1
Solyc06g083630.2.1
Solyc08g081730.2.1
Solyc09g063020.2.1
Solyc11g005000.1.1
Solyc11g064790.1.1
Solyc11g073050.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G11220.1	Solyc06g073270.2.1	AT1G09330.1	21798944
AT4G11220.1	Solyc06g083630.2.1	AT3G59500.1	21798944
AT4G11220.1	Solyc09g063020.2.1	AT3G59500.1	21798944
AT5G41600.1	Solyc03g121460.1.1	AT1G55190.1	21798944
AT5G41600.1	Solyc11g005000.1.1	AT1G77350.1	21798944
AT5G41600.1	Solyc01g008820.2.1	AT2G03120.1	21798944
AT5G41600.1	Solyc11g064790.1.1	AT2G03120.1	21798944
AT5G41600.1	Solyc04g072110.2.1	AT2G39960.1	21798944
AT5G41600.1	Solyc01g005320.2.1	AT2G46890.1	21798944
AT5G41600.1	Solyc02g063390.2.1	AT2G46890.1	21798944
AT5G41600.1	Solyc02g089780.2.1	AT3G02420.1	21798944
AT5G41600.1	Solyc03g045090.2.1	AT3G02420.1	21798944
AT5G41600.1	Solyc04g049180.2.1	AT3G07950.1	21798944
AT5G41600.1	Solyc02g068130.2.1	AT3G27080.1	21798944
AT5G41600.1	Solyc02g094140.2.1	AT3G27080.1	21798944
AT5G41600.1	Solyc02g087060.2.1	AT3G28050.1	21798944
AT5G41600.1	Solyc06g005350.2.1	AT3G46060.1	21798944
AT5G41600.1	Solyc11g073050.1.1	AT3G46060.1	21798944
AT5G41600.1	Solyc06g083630.2.1	AT3G59500.1	21798944
AT5G41600.1	Solyc09g063020.2.1	AT3G59500.1	21798944
AT5G41600.1	Solyc08g081730.2.1	AT5G41600.1	21798944
AT5G41600.1	Solyc03g082600.2.1	AT5G53560.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400032086	Potato	cytosol, nucleus, plasma membrane	97.04	97.04
KRH59988	Soybean	mitochondrion	70.0	74.41
KRH41254	Soybean	cytosol, nucleus, plasma membrane	69.26	73.62
Solyc01g095200.2.1	Tomato	plastid	68.52	70.34
VIT_02s0025g00640.t01	Wine grape	cytosol, nucleus, plasma membrane	65.56	70.24
Os01t0226300-01	Rice	plasma membrane	45.93	69.66
Solyc03g007740.2.1	Tomato	nucleus	64.44	68.24
GSMUA_Achr8P27830_001	Banana	cytosol, peroxisome, plasma membrane	62.96	67.73
VIT_15s0046g01760.t01	Wine grape	cytosol, peroxisome, plasma membrane	63.7	67.45
Solyc10g011870.2.1	Tomato	cytosol, nucleus, plasma membrane	65.56	67.3
Zm00001d043551_P003	Maize	plasma membrane	63.7	66.93
Zm00001d012776_P001	Maize	extracellular	62.59	66.8
KXG33320	Sorghum	cytosol, nucleus, plasma membrane	63.7	66.67
Os05t0526400-01	Rice	plasma membrane	61.85	66.53
Os01t0736900-01	Rice	plasma membrane	62.22	66.4
CDX90792	Canola	cytosol, peroxisome, plasma membrane	65.19	65.92
Bra000739.1-P	Field mustard	cytosol	65.19	65.92
GSMUA_AchrUn_...	Banana	cytosol, nucleus, plasma membrane	62.96	65.89
CDY25557	Canola	cytosol, endoplasmic reticulum, nucleus	61.11	65.74
HORVU3Hr1G069970.2	Barley	cytosol, nucleus, plasma membrane	61.85	65.49
AT5G41600.1	Thale cress	cytosol, nucleus, plasma membrane	62.22	65.37
TraesCS3D01G279100.1	Wheat	cytosol, nucleus, plasma membrane	60.0	65.32
TraesCS3A01G278800.1	Wheat	golgi	60.0	65.32
CDY08353	Canola	cytosol, endoplasmic reticulum, nucleus	60.37	65.2
CDY34396	Canola	cytosol, endoplasmic reticulum, nucleus	60.37	64.94
GSMUA_Achr9P05440_001	Banana	nucleus, peroxisome, plasma membrane	60.37	64.94
TraesCS1D01G349700.1	Wheat	cytosol, nucleus, plasma membrane	59.63	64.92
TraesCS3B01G313000.1	Wheat	cytosol, nucleus, plasma membrane	60.74	64.82
GSMUA_Achr6P31860_001	Banana	cytosol, nucleus, plasma membrane	60.37	64.68
TraesCS1B01G360800.1	Wheat	cytosol, nucleus, plasma membrane	59.63	64.66
CDY10954	Canola	cytosol	64.44	64.44
CDY38194	Canola	cytosol, nucleus, plasma membrane	59.63	64.4
AT4G23630.2	Thale cress	nucleus	65.56	64.36
EES19841	Sorghum	cytosol, nucleus, plasma membrane	60.74	64.31
Bra019285.1-P	Field mustard	cytosol	63.7	64.18
Bra027678.1-P	Field mustard	cytosol, endoplasmic reticulum, nucleus	59.63	64.14
CDY44123	Canola	cytosol, nucleus, plasma membrane	65.56	64.13
AT4G11220.1	Thale cress	nucleus	64.07	63.84
Solyc06g036430.2.1	Tomato	cytosol, nucleus, plasma membrane	59.63	63.64
Bra027757.1-P	Field mustard	cytosol, endoplasmic reticulum, peroxisome	58.89	63.6
Bra010539.1-P	Field mustard	cytosol	63.33	63.57
CDY24806	Canola	cytosol	64.44	63.5
GSMUA_Achr10P...	Banana	cytosol, endoplasmic reticulum, plasma membrane	59.26	63.49
Bra013717.1-P	Field mustard	nucleus	64.81	63.41
CDY57657	Canola	cytosol, nucleus, plasma membrane	64.44	63.27
CDY41666	Canola	cytosol	64.07	62.68
Zm00001d038768_P001	Maize	extracellular, mitochondrion	58.89	62.6
GSMUA_Achr4P08400_001	Banana	cytosol	57.78	61.66
GSMUA_Achr3P31920_001	Banana	cytosol	49.26	60.73
GSMUA_Achr5P06850_001	Banana	cytosol, nucleus, plasma membrane	55.19	59.6
AT1G64090.2	Thale cress	cytosol, endoplasmic reticulum, nucleus	59.63	59.41
TraesCS3D01G159100.1	Wheat	cytosol, nucleus, plasma membrane	61.85	58.39
CDY13240	Canola	cytosol, peroxisome, plasma membrane	34.81	58.39
Zm00001d008982_P001	Maize	cytosol, nucleus, plasma membrane	60.0	58.06
TraesCS3B01G178100.1	Wheat	cytosol, nucleus, plasma membrane	61.48	58.04
KXG31516	Sorghum	cytosol, nucleus, plasma membrane	60.0	57.04
Zm00001d016041_P001	Maize	extracellular	48.15	56.52
Os02t0265900-01	Rice	cytosol, peroxisome, plasma membrane	48.15	56.52
OQU84758	Sorghum	cytosol, peroxisome, plasma membrane	46.67	54.31
CDY05135	Canola	mitochondrion	62.59	53.99
Zm00001d039316_P001	Maize	cytosol, nucleus, plasma membrane	61.11	53.92
HORVU3Hr1G030760.2	Barley	mitochondrion	61.48	52.87
EER89811	Sorghum	peroxisome	50.0	52.73
Zm00001d020729_P001	Maize	plasma membrane	18.52	52.63
Zm00001d020229_P001	Maize	plasma membrane	29.26	51.97
TraesCS7B01G241100.1	Wheat	cytosol, peroxisome, plasma membrane, plastid	50.0	51.92
TraesCS7D01G337800.1	Wheat	cytosol, peroxisome, plasma membrane, plastid	50.0	51.92
TraesCS7A01G341800.1	Wheat	cytosol, peroxisome, plasma membrane, plastid	50.0	51.92
TraesCS3A01G151200.1	Wheat	cytosol, peroxisome, plasma membrane	61.85	51.86
TraesCS1A01G346800.3	Wheat	plasma membrane	47.41	50.79
Zm00001d037453_P001	Maize	cytosol, peroxisome, plasma membrane	48.89	50.57
Os06t0503400-01	Rice	plasma membrane	49.63	50.57
Solyc06g082740.2.1	Tomato	nucleus	42.22	49.78
Solyc09g055250.2.1	Tomato	cytosol, endoplasmic reticulum, peroxisome	44.07	48.77
HORVU1Hr1G082010.3	Barley	cytosol, nucleus, plasma membrane, plastid	47.04	48.66
HORVU7Hr1G081290.4	Barley	plastid	41.11	48.05
CDY62522	Canola	cytosol	14.07	47.5
Solyc12g006290.1.1	Tomato	nucleus	40.0	46.35
HORVU7Hr1G075700.2	Barley	mitochondrion	49.63	44.67
Solyc09g013110.2.1	Tomato	cytosol, plasma membrane, vacuole	32.22	41.63
Solyc05g008890.2.1	Tomato	plasma membrane	33.7	41.18
GSMUA_Achr3P15760_001	Banana	cytosol	22.59	40.67
Bra035242.1-P	Field mustard	cytosol	30.0	40.5
CDX86802	Canola	cytosol, nucleus, peroxisome	35.93	39.59
Solyc07g044880.2.1	Tomato	mitochondrion	20.37	38.73
Solyc06g049060.2.1	Tomato	mitochondrion, plasma membrane	26.67	37.89
Solyc03g119190.2.1	Tomato	plasma membrane	30.37	37.44
VIT_07s0031g02730.t01	Wine grape	golgi, mitochondrion, nucleus, plasma membrane	22.96	34.44
Solyc01g107620.2.1	Tomato	plasma membrane	25.93	31.96
Solyc02g090370.2.1	Tomato	plasma membrane	17.78	25.67

Protein Annotations

EnsemblPlants:Solyc08g081730.2.1	EnsemblPlantsGene:Solyc08g081730.2	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005783	GO:GO:0005789	GO:GO:0016020	GO:GO:0016021	InterPro:IPR003388	InterPro:Reticulon
PANTHER:PTHR10994	PANTHER:PTHR10994:SF125	PFAM:PF02453	PFscan:PS50845	SEG:seg	TMHMM:TMhelix
UniParc:UPI00001AB8A6	UniProt:K4CPG9	MapMan:13.7.2.1	:	:	:

Description

Reticulon-like protein [Source:UniProtKB/TrEMBL;Acc:K4CPG9]

Coordinates

chr8:+:64706803..64709069

Molecular Weight (calculated)

30050.4 Da

IEP (calculated)

8.145

GRAVY (calculated)

-0.083

Length

270 amino acids

Sequence
(BLAST)

001: MTEHDDHKVE KEEHDESLMD KISEKLHFSN HSSSPAPASS SSDSDDEKKK PTSPAPATSS FGSKVRRLFG RERPVHKVFG GGKPADVFLW RNKKISAGFL
101: GGATAIWVLF EVVEYHLLTL LCHGLMIALA GLFLWSNAST FIHKSAPHIP EVHIPEKPVL EFASALRNEI NRALAVLREI ASGRDLKMFL LVIGGLWLAS
201: ILGGCCDFLT LFYIIVVVLH TVPVLYEKYE DQVDAFAEKA LHELKKQYAV LDAKVLSKIP RGPLKDKKKD

Best Arabidopsis Sequence Match ( AT4G23630.2 )
(BLAST)

001: MAEEHKHDES VIAPEPAVEV VERESLMDKI SEKIHHGGDS SSSSSSSDDE DEKKKTKKPS SPSSSMKSKV YRLFGREQPV HKVLGGGKPA DIFMWKNKKM
101: SGGVLGGATA AWVVFELMEY HLLTLLCHVM IVVLAVLFLW SNATMFINKS PPKIPEVHIP EEPILQLASG LRIEINRGFS SLREIASGRD LKKFLIAIAG
201: LWVLSILGGC FNFLTLAYIA LVLLFTVPLA YDKYEDKVDP LGEKAMIELK KQYAVLDEKV LSKIPLGPLK NKKKD

Arabidopsis Description

RTNLB1Reticulon-like protein [Source:UniProtKB/TrEMBL;Acc:A0A178V247]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.