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Wine grape
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Wine grape
Subcellular Localization
min:
: max

 
Winner_takes_all: peroxisome, cytosol, plasma membrane

Predictor Summary:
  • nucleus 1
  • cytosol 1
  • plasma membrane 3
  • extracellular 1
  • endoplasmic reticulum 1
  • vacuole 1
  • golgi 1
  • peroxisome 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol, peroxisome, plasma membrane
Any Predictor:cytosol, nucleus, peroxisome, secretory
BaCelLo:nucleus
MultiLoc:cytosol
Plant-mPloc:plasma membrane
PProwler:secretory
WoLF PSORT:plasma membrane
YLoc:peroxisome
PPI

Inferred distinct locusB in Crop

locusBlocations
VIT_02s0025g00640.t01
VIT_05s0102g00730.t01
VIT_06s0004g04200.t01
VIT_06s0009g03520.t01
VIT_07s0005g01960.t01
VIT_07s0031g02730.t01
VIT_09s0002g02400.t01
VIT_13s0019g03400.t01
VIT_13s0019g04120.t01
VIT_14s0060g00830.t01
VIT_14s0066g01650.t01
VIT_14s0068g02030.t01
VIT_14s0083g00300.t01
VIT_15s0046g01760.t01
VIT_15s0048g02220.t01
VIT_16s0098g01230.t01
VIT_19s0015g00340.t01
VIT_19s0085g00270.t01

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT4G11220.1 VIT_07s0005g01960.t01 AT1G09330.1 21798944
AT4G11220.1 VIT_14s0060g00830.t01 AT1G09330.1 21798944
AT4G11220.1 VIT_05s0102g00730.t01 AT3G59500.1 21798944
AT5G41600.1 VIT_09s0002g02400.t01 AT1G55190.1 21798944
AT5G41600.1 VIT_19s0085g00270.t01 AT1G77350.1 21798944
AT5G41600.1 VIT_06s0009g03520.t01 AT2G03120.1 21798944
AT5G41600.1 VIT_13s0019g03400.t01 AT2G39960.1 21798944
AT5G41600.1 VIT_15s0048g02220.t01 AT2G46890.1 21798944
AT5G41600.1 VIT_14s0083g00300.t01 AT3G02420.1 21798944
AT5G41600.1 VIT_13s0019g04120.t01 AT3G07950.1 21798944
AT5G41600.1 VIT_19s0015g00340.t01 AT3G13175.1 21798944
AT5G41600.1 VIT_14s0068g02030.t01 AT3G27080.1 21798944
AT5G41600.1 VIT_14s0066g01650.t01 AT3G28050.1 21798944
AT5G41600.1 VIT_06s0004g04200.t01 AT3G46060.1 21798944
AT5G41600.1 VIT_05s0102g00730.t01 AT3G59500.1 21798944
AT5G41600.1 VIT_02s0025g00640.t01 AT5G41600.1 21798944
AT5G41600.1 VIT_07s0031g02730.t01 AT5G41600.1 21798944
AT5G41600.1 VIT_15s0046g01760.t01 AT5G41600.1 21798944
AT5G41600.1 VIT_16s0098g01230.t01 AT5G53560.1 21798944
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
VIT_02s0025g00640.t01 Wine grape cytosol, nucleus, plasma membrane 74.12 75.0
Os01t0226300-01 Rice plasma membrane 50.2 71.91
GSMUA_Achr8P27830_001 Banana cytosol, peroxisome, plasma membrane 69.41 70.52
GSMUA_AchrUn_... Banana cytosol, nucleus, plasma membrane 70.98 70.16
GSMUA_Achr9P05440_001 Banana nucleus, peroxisome, plasma membrane 68.63 69.72
Os05t0526400-01 Rice plasma membrane 67.84 68.92
Zm00001d043551_P003 Maize plasma membrane 69.41 68.87
Os01t0736900-01 Rice plasma membrane 67.45 67.98
GSMUA_Achr6P31860_001 Banana cytosol, nucleus, plasma membrane 67.06 67.86
EES19841 Sorghum cytosol, nucleus, plasma membrane 67.84 67.84
KXG33320 Sorghum cytosol, nucleus, plasma membrane 68.63 67.83
Zm00001d012776_P001 Maize extracellular 66.67 67.19
TraesCS1D01G349700.1 Wheat cytosol, nucleus, plasma membrane 65.1 66.94
TraesCS1B01G360800.1 Wheat cytosol, nucleus, plasma membrane 65.1 66.67
GSMUA_Achr3P31920_001 Banana cytosol 57.25 66.67
Zm00001d038768_P001 Maize extracellular, mitochondrion 66.27 66.54
CDY08353 Canola cytosol, endoplasmic reticulum, nucleus 65.1 66.4
CDY25557 Canola cytosol, endoplasmic reticulum, nucleus 65.1 66.14
CDY34396 Canola cytosol, endoplasmic reticulum, nucleus 65.1 66.14
TraesCS3D01G279100.1 Wheat cytosol, nucleus, plasma membrane 64.31 66.13
GSMUA_Achr4P08400_001 Banana cytosol 65.49 66.01
TraesCS3B01G313000.1 Wheat cytosol, nucleus, plasma membrane 65.49 66.01
GSMUA_Achr10P... Banana cytosol, endoplasmic reticulum, plasma membrane 65.1 65.87
AT5G41600.1 Thale cress cytosol, nucleus, plasma membrane 66.27 65.76
Bra027678.1-P Field mustard cytosol, endoplasmic reticulum, nucleus 64.71 65.74
CDY38194 Canola cytosol, nucleus, plasma membrane 64.31 65.6
HORVU3Hr1G069970.2 Barley cytosol, nucleus, plasma membrane 65.49 65.49
TraesCS3A01G278800.1 Wheat golgi 63.53 65.32
Bra027757.1-P Field mustard cytosol, endoplasmic reticulum, peroxisome 63.53 64.8
AT4G23630.2 Thale cress nucleus 69.8 64.73
PGSC0003DMT400032086 Potato cytosol, nucleus, plasma membrane 68.24 64.44
CDY57657 Canola cytosol, nucleus, plasma membrane 69.02 64.0
CDY24806 Canola cytosol 68.63 63.87
Solyc08g081730.2.1 Tomato endoplasmic reticulum, plastid 67.45 63.7
Bra010539.1-P Field mustard cytosol 67.06 63.57
Bra019285.1-P Field mustard cytosol 66.67 63.43
CDY44123 Canola cytosol, nucleus, plasma membrane 68.63 63.41
Bra013717.1-P Field mustard nucleus 68.63 63.41
VIT_02s0025g00590.t01 Wine grape mitochondrion 14.9 63.33
CDY10954 Canola cytosol 67.06 63.33
GSMUA_Achr5P06850_001 Banana cytosol, nucleus, plasma membrane 61.57 62.8
CDY41666 Canola cytosol 67.84 62.68
CDX90792 Canola cytosol, peroxisome, plasma membrane 65.1 62.17
AT1G64090.2 Thale cress cytosol, endoplasmic reticulum, nucleus 65.88 61.99
TraesCS3B01G178100.1 Wheat cytosol, nucleus, plasma membrane 69.41 61.89
TraesCS3D01G159100.1 Wheat cytosol, nucleus, plasma membrane 69.41 61.89
Bra000739.1-P Field mustard cytosol 64.71 61.8
Zm00001d008982_P001 Maize cytosol, nucleus, plasma membrane 67.45 61.65
VIT_16s0050g01790.t01 Wine grape cytosol, nucleus, plasma membrane 61.18 61.42
KXG31516 Sorghum cytosol, nucleus, plasma membrane 68.24 61.27
AT4G11220.1 Thale cress nucleus 64.31 60.52
Zm00001d020229_P001 Maize plasma membrane 34.51 57.89
CDY13240 Canola cytosol, peroxisome, plasma membrane 36.47 57.76
Zm00001d020729_P001 Maize plasma membrane 21.18 56.84
Zm00001d039316_P001 Maize cytosol, nucleus, plasma membrane 67.84 56.54
HORVU3Hr1G030760.2 Barley mitochondrion 69.41 56.37
Os02t0265900-01 Rice cytosol, peroxisome, plasma membrane 50.2 55.65
Zm00001d016041_P001 Maize extracellular 50.2 55.65
TraesCS3A01G151200.1 Wheat cytosol, peroxisome, plasma membrane 69.8 55.28
TraesCS1A01G346800.3 Wheat plasma membrane 53.73 54.37
OQU84758 Sorghum cytosol, peroxisome, plasma membrane 49.02 53.88
CDY05135 Canola mitochondrion 63.92 52.08
EER89811 Sorghum peroxisome 52.16 51.95
HORVU1Hr1G082010.3 Barley cytosol, nucleus, plasma membrane, plastid 52.16 50.96
TraesCS7B01G241100.1 Wheat cytosol, peroxisome, plasma membrane, plastid 50.98 50.0
TraesCS7A01G341800.1 Wheat cytosol, peroxisome, plasma membrane, plastid 50.98 50.0
Os06t0503400-01 Rice plasma membrane 51.76 49.81
Zm00001d037453_P001 Maize cytosol, peroxisome, plasma membrane 50.98 49.81
TraesCS7D01G337800.1 Wheat cytosol, peroxisome, plasma membrane, plastid 50.59 49.62
CDY62522 Canola cytosol 14.51 46.25
GSMUA_Achr3P15760_001 Banana cytosol 25.88 44.0
HORVU7Hr1G081290.4 Barley plastid 39.22 43.29
HORVU7Hr1G075700.2 Barley mitochondrion 50.59 43.0
VIT_07s0031g02730.t01 Wine grape golgi, mitochondrion, nucleus, plasma membrane 30.2 42.78
VIT_03s0180g00170.t01 Wine grape endoplasmic reticulum, plasma membrane, vacuole 33.33 41.06
VIT_12s0028g01090.t01 Wine grape cytosol, peroxisome, plasma membrane 39.61 40.73
Bra035242.1-P Field mustard cytosol 31.37 40.0
CDX86802 Canola cytosol, nucleus, peroxisome 37.65 39.18
VIT_17s0000g03260.t01 Wine grape plasma membrane 32.16 38.68
VIT_08s0007g01720.t01 Wine grape plasma membrane 30.59 37.32
VIT_00s0253g00030.t01 Wine grape endoplasmic reticulum, plasma membrane, vacuole 25.1 29.91
VIT_01s0011g04030.t01 Wine grape cytosol 33.73 22.99
VIT_13s0067g02960.t01 Wine grape endoplasmic reticulum, peroxisome, plasma membrane 21.57 16.82
Protein Annotations
EntrezGene:100241363wikigene:100241363MapMan:13.7.2.1ProteinID:CBI40444ProteinID:CBI40444.3UniProt:D7UCH9
EMBL:FN596755GO:GO:0005575GO:GO:0005622GO:GO:0005623GO:GO:0005737GO:GO:0005783
GO:GO:0005789GO:GO:0016020GO:GO:0016021InterPro:IPR003388EntrezGene:LOC100241363wikigene:LOC100241363
PFAM:PF02453PFscan:PS50845PANTHER:PTHR10994PANTHER:PTHR10994:SF70InterPro:ReticulonTIGR:TC52545
TIGR:TC55196TMHMM:TMhelixUniParc:UPI00015CB00BArrayExpress:VIT_15s0046g01760EnsemblPlantsGene:VIT_15s0046g01760EnsemblPlants:VIT_15s0046g01760.t01
unigene:Vvi.19213RefSeq:XP_003633964RefSeq:XP_003633964.1RefSeq:XP_003633965RefSeq:XP_003633965.1SEG:seg
Description
Reticulon-like protein [Source:UniProtKB/TrEMBL;Acc:D7UCH9]
Coordinates
chr15:-:18605132..18607483
Molecular Weight (calculated)
28264.7 Da
IEP (calculated)
8.867
GRAVY (calculated)
0.217
Length
255 amino acids
Sequence
(BLAST)
001: MAEHAEGSGA ASESLLEKIT DKLQGHDSSS SGSDSDSDKP ASPSPIKAKV FRLFGREKPV HTVLGGGKHA DVFLWRNKKI SAGVLGGATA MWVLFELLEY
101: HLLTLVCHIL ILSLAILFLW SNATTFINKS PPRIPEVHIP EDPFLQAVNA LRIEINCGFA VLRDIASGRD LKKFLIIIAG LWVLSILGSC CNFLTLFYIT
201: FVLLHTVPVI YEKYEDRIDP FAEKATIEIK KQYAVFDAKV LSKIPKVPLK YKKMA
Best Arabidopsis Sequence Match ( AT4G23630.2 )
(BLAST)
001: MAEEHKHDES VIAPEPAVEV VERESLMDKI SEKIHHGGDS SSSSSSSDDE DEKKKTKKPS SPSSSMKSKV YRLFGREQPV HKVLGGGKPA DIFMWKNKKM
101: SGGVLGGATA AWVVFELMEY HLLTLLCHVM IVVLAVLFLW SNATMFINKS PPKIPEVHIP EEPILQLASG LRIEINRGFS SLREIASGRD LKKFLIAIAG
201: LWVLSILGGC FNFLTLAYIA LVLLFTVPLA YDKYEDKVDP LGEKAMIELK KQYAVLDEKV LSKIPLGPLK NKKKD
Arabidopsis Description
RTNLB1Reticulon-like protein [Source:UniProtKB/TrEMBL;Acc:A0A178V247]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.