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Canola
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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol, nucleus, plasma membrane

Predictor Summary:
  • nucleus 2
  • cytosol 1
  • mitochondrion 1
  • plasma membrane 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol, nucleus, plasma membrane
Any Predictor:cytosol, nucleus
BaCelLo:nucleus
MultiLoc:cytosol
PProwler:mitochondrion
WoLF PSORT:plasma membrane
YLoc:nucleus
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Bra013717.1-P Field mustard nucleus 98.19 98.19
CDY57657 Canola cytosol, nucleus, plasma membrane 97.1 97.45
CDY10954 Canola cytosol 91.3 93.33
AT4G23630.2 Thale cress nucleus 92.75 93.09
CDY24806 Canola cytosol 90.94 91.61
CDY41666 Canola cytosol 91.3 91.3
CDX90792 Canola cytosol, peroxisome, plasma membrane 81.88 84.64
CDY05135 Canola mitochondrion 81.16 71.57
CDY34396 Canola cytosol, endoplasmic reticulum, nucleus 63.77 70.12
KRH59988 Soybean mitochondrion 64.49 70.08
CDY08353 Canola cytosol, endoplasmic reticulum, nucleus 63.41 70.0
CDY38194 Canola cytosol, nucleus, plasma membrane 63.04 69.6
CDY13240 Canola cytosol, peroxisome, plasma membrane 40.58 69.57
CDY25557 Canola cytosol, endoplasmic reticulum, nucleus 63.04 69.32
KRH41254 Soybean cytosol, nucleus, plasma membrane 63.77 69.29
VIT_02s0025g00640.t01 Wine grape cytosol, nucleus, plasma membrane 62.68 68.65
VIT_15s0046g01760.t01 Wine grape cytosol, peroxisome, plasma membrane 63.41 68.63
GSMUA_Achr8P27830_001 Banana cytosol, peroxisome, plasma membrane 60.51 66.53
TraesCS3D01G279100.1 Wheat cytosol, nucleus, plasma membrane 59.42 66.13
PGSC0003DMT400032086 Potato cytosol, nucleus, plasma membrane 64.13 65.56
Solyc08g081730.2.1 Tomato endoplasmic reticulum, plastid 64.13 65.56
HORVU3Hr1G069970.2 Barley cytosol, nucleus, plasma membrane 60.51 65.49
CDX79993 Canola cytosol, peroxisome, plasma membrane 59.42 65.34
Os05t0526400-01 Rice plasma membrane 59.42 65.34
TraesCS3A01G278800.1 Wheat golgi 58.7 65.32
TraesCS3B01G313000.1 Wheat cytosol, nucleus, plasma membrane 59.78 65.22
CDY42012 Canola cytosol, peroxisome, plasma membrane 59.06 64.94
Zm00001d012776_P001 Maize extracellular 59.42 64.82
Zm00001d043551_P003 Maize plasma membrane 60.14 64.59
GSMUA_Achr9P05440_001 Banana nucleus, peroxisome, plasma membrane 58.7 64.54
Os01t0736900-01 Rice plasma membrane 59.06 64.43
KXG33320 Sorghum cytosol, nucleus, plasma membrane 59.78 63.95
CDY52012 Canola cytosol, peroxisome, plasma membrane 58.7 63.78
EES19841 Sorghum cytosol, nucleus, plasma membrane 58.33 63.14
TraesCS1B01G360800.1 Wheat cytosol, nucleus, plasma membrane 56.88 63.05
TraesCS1D01G349700.1 Wheat cytosol, nucleus, plasma membrane 56.52 62.9
CDY62522 Canola cytosol 18.12 62.5
Os01t0226300-01 Rice plasma membrane 40.22 62.36
GSMUA_Achr6P31860_001 Banana cytosol, nucleus, plasma membrane 56.88 62.3
CDY53913 Canola cytosol, peroxisome, plasma membrane 57.25 62.2
GSMUA_AchrUn_... Banana cytosol, nucleus, plasma membrane 57.97 62.02
Zm00001d038768_P001 Maize extracellular, mitochondrion 56.88 61.81
GSMUA_Achr10P... Banana cytosol, endoplasmic reticulum, plasma membrane 55.07 60.32
GSMUA_Achr4P08400_001 Banana cytosol 53.99 58.89
GSMUA_Achr3P31920_001 Banana cytosol 46.38 58.45
GSMUA_Achr5P06850_001 Banana cytosol, nucleus, plasma membrane 50.0 55.2
Zm00001d008982_P001 Maize cytosol, nucleus, plasma membrane 54.71 54.12
KXG31516 Sorghum cytosol, nucleus, plasma membrane 55.07 53.52
TraesCS3D01G159100.1 Wheat cytosol, nucleus, plasma membrane 55.07 53.15
Os02t0265900-01 Rice cytosol, peroxisome, plasma membrane 44.2 53.04
TraesCS3B01G178100.1 Wheat cytosol, nucleus, plasma membrane 54.71 52.8
Zm00001d016041_P001 Maize extracellular 43.48 52.17
OQU84758 Sorghum cytosol, peroxisome, plasma membrane 43.12 51.29
TraesCS1A01G346800.3 Wheat plasma membrane 46.74 51.19
Zm00001d020229_P001 Maize plasma membrane 27.9 50.66
HORVU1Hr1G082010.3 Barley cytosol, nucleus, plasma membrane, plastid 47.1 49.81
Zm00001d039316_P001 Maize cytosol, nucleus, plasma membrane 54.71 49.35
TraesCS7A01G341800.1 Wheat cytosol, peroxisome, plasma membrane, plastid 46.38 49.23
TraesCS7B01G241100.1 Wheat cytosol, peroxisome, plasma membrane, plastid 46.38 49.23
EER89811 Sorghum peroxisome 45.65 49.22
TraesCS7D01G337800.1 Wheat cytosol, peroxisome, plasma membrane, plastid 46.01 48.85
CDY07184 Canola cytosol, peroxisome, plasma membrane 42.75 48.56
CDY48510 Canola cytosol 42.75 48.56
Zm00001d037453_P001 Maize cytosol, peroxisome, plasma membrane 45.65 48.28
HORVU3Hr1G030760.2 Barley mitochondrion 54.71 48.09
Os06t0503400-01 Rice plasma membrane 46.01 47.92
Zm00001d020729_P001 Maize plasma membrane 16.3 47.37
TraesCS3A01G151200.1 Wheat cytosol, peroxisome, plasma membrane 54.71 46.89
HORVU7Hr1G081290.4 Barley plastid 37.68 45.02
CDX86802 Canola cytosol, nucleus, peroxisome 39.86 44.9
HORVU7Hr1G075700.2 Barley mitochondrion 46.01 42.33
GSMUA_Achr3P15760_001 Banana cytosol 22.1 40.67
CDY00916 Canola plasma membrane 34.06 39.33
CDY08616 Canola plasma membrane 33.33 38.49
CDX75962 Canola plasma membrane 30.43 37.5
CDY51936 Canola endoplasmic reticulum, peroxisome, plasma membrane 30.43 37.5
CDY46172 Canola plastid 27.17 37.13
CDX99221 Canola plasma membrane 27.17 36.95
CDY66516 Canola endoplasmic reticulum, extracellular 24.64 36.56
CDY67571 Canola plasma membrane 29.35 36.16
CDX82294 Canola plastid 25.36 35.71
CDY22970 Canola plasma membrane 25.36 35.71
CDY22971 Canola plasma membrane 25.36 35.71
VIT_07s0031g02730.t01 Wine grape golgi, mitochondrion, nucleus, plasma membrane 22.83 35.0
CDX67589 Canola golgi, plasma membrane, vacuole 24.28 33.0
CDY51584 Canola plasma membrane 24.28 33.0
CDX96038 Canola plasma membrane 25.0 32.7
CDY01898 Canola plasma membrane 25.0 32.55
CDX81500 Canola plasma membrane 24.28 32.21
CDX89122 Canola extracellular, mitochondrion 17.39 31.37
CDX78209 Canola golgi, plasma membrane, vacuole 23.19 31.22
CDX71213 Canola plasma membrane 22.83 31.03
CDY48222 Canola cytosol, endoplasmic reticulum, plasma membrane 22.83 31.03
CDX73507 Canola cytosol, golgi, plasma membrane 22.83 30.73
CDY00975 Canola cytosol, endoplasmic reticulum, peroxisome 26.45 30.54
CDY08567 Canola cytosol 25.72 29.46
CDY36282 Canola plasma membrane 23.55 29.15
CDY56712 Canola mitochondrion 33.33 25.92
CDX82165 Canola endoplasmic reticulum, peroxisome, plasma membrane, plastid 22.83 25.4
CDY46067 Canola plasma membrane 18.12 24.04
CDX76854 Canola plasma membrane 17.75 23.67
CDY12701 Canola plasma membrane 24.64 22.52
Protein Annotations
MapMan:13.7.2.1GO:A0A078I4R4UniProt:A0A078I4R4EnsemblPlants:CDY44123ProteinID:CDY44123ProteinID:CDY44123.1
GO:GO:0005575GO:GO:0005622GO:GO:0005623GO:GO:0005737GO:GO:0005783GO:GO:0005789
GO:GO:0016020GO:GO:0016021EnsemblPlantsGene:GSBRNA2T00079569001InterPro:IPR003388PFAM:PF02453PFscan:PS50845
PANTHER:PTHR10994PANTHER:PTHR10994:SF70InterPro:ReticulonTMHMM:TMhelixUniParc:UPI0001B63FBASEG:seg
Description
BnaA01g13310DReticulon-like protein [Source:UniProtKB/TrEMBL;Acc:A0A078I4R4]
Coordinates
chrLK032579:+:221348..222909
Molecular Weight (calculated)
30941.0 Da
IEP (calculated)
8.223
GRAVY (calculated)
-0.146
Length
276 amino acids
Sequence
(BLAST)
001: MTEEHKHDES VTAPEPAVEI VERESLMDKI SEKIHHGGDS SSSSSSSDDD DDKKEKKTKK PESPSSMKSK VYRLFGREKP VHKVLGGGKP ADIFMWKDKK
101: MSGGVLGGAT AAWVLFELME YHLLTLLCHV MIVVLAVLFL WSNATMFINK SPPKIPEVHI PEEPILQLAS GLRIEINRGL SSLREIASGR DLKKFLCAIF
201: GLWVLSIMGG WFNFLTLAYI ALVLLFTVPL VYDKYEDKVD PLGEKAMIEI KKQYAVLDEK VLSKIPMGPL KNKKKD
Best Arabidopsis Sequence Match ( AT4G23630.2 )
(BLAST)
001: MAEEHKHDES VIAPEPAVEV VERESLMDKI SEKIHHGGDS SSSSSSSDDE DEKKKTKKPS SPSSSMKSKV YRLFGREQPV HKVLGGGKPA DIFMWKNKKM
101: SGGVLGGATA AWVVFELMEY HLLTLLCHVM IVVLAVLFLW SNATMFINKS PPKIPEVHIP EEPILQLASG LRIEINRGFS SLREIASGRD LKKFLIAIAG
201: LWVLSILGGC FNFLTLAYIA LVLLFTVPLA YDKYEDKVDP LGEKAMIELK KQYAVLDEKV LSKIPLGPLK NKKKD
Arabidopsis Description
RTNLB1Reticulon-like protein [Source:UniProtKB/TrEMBL;Acc:A0A178V247]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.