Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- plastid 1
- golgi 2
- extracellular 1
- plasma membrane 3
- endoplasmic reticulum 1
- vacuole 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY01898 | Canola | plasma membrane | 88.94 | 87.26 |
| AT1G68230.2 | Thale cress | plasma membrane | 89.9 | 86.98 |
| CDX96038 | Canola | plasma membrane | 87.98 | 86.73 |
| CDY12701 | Canola | plasma membrane | 97.6 | 67.22 |
| PGSC0003DMT400078544 | Potato | endoplasmic reticulum, plasma membrane, vacuole | 32.69 | 44.16 |
| Solyc05g008890.2.1 | Tomato | plasma membrane | 44.71 | 42.08 |
| KRH35899 | Soybean | plasma membrane | 42.79 | 41.98 |
| CDY66516 | Canola | endoplasmic reticulum, extracellular | 31.73 | 35.48 |
| KXG33168 | Sorghum | golgi, peroxisome, plasma membrane | 36.54 | 35.19 |
| GSMUA_Achr2P07230_001 | Banana | golgi, plasma membrane, vacuole | 35.1 | 34.76 |
| Os01t0139000-00 | Rice | plasma membrane | 34.62 | 33.8 |
| EES19907 | Sorghum | cytosol, peroxisome, plasma membrane | 36.54 | 33.63 |
| EES02516 | Sorghum | peroxisome, plastid | 35.1 | 33.49 |
| CDY51936 | Canola | endoplasmic reticulum, peroxisome, plasma membrane | 36.06 | 33.48 |
| GSMUA_Achr8P31770_001 | Banana | peroxisome | 35.58 | 33.18 |
| CDX75962 | Canola | plasma membrane | 35.58 | 33.04 |
| Os01t0691400-00 | Rice | cytosol, peroxisome | 36.54 | 32.9 |
| TraesCS3A01G261500.1 | Wheat | plasma membrane | 34.62 | 32.88 |
| TraesCS3B01G294700.1 | Wheat | plasma membrane | 34.62 | 32.88 |
| Zm00001d011631_P001 | Maize | golgi, peroxisome, plasma membrane | 34.13 | 32.13 |
| HORVU3Hr1G064240.2 | Barley | plasma membrane | 33.65 | 31.96 |
| TraesCS3D01G050800.1 | Wheat | mitochondrion | 35.58 | 31.62 |
| Zm00001d038910_P001 | Maize | plasma membrane | 34.13 | 31.28 |
| CDY67571 | Canola | plasma membrane | 33.65 | 31.25 |
| CDY53913 | Canola | cytosol, peroxisome, plasma membrane | 37.98 | 31.1 |
| TraesCS3B01G060400.1 | Wheat | mitochondrion | 35.1 | 30.8 |
| CDY52012 | Canola | cytosol, peroxisome, plasma membrane | 37.5 | 30.71 |
| TraesCS1A01G373800.1 | Wheat | cytosol, peroxisome, plasma membrane | 32.21 | 28.63 |
| TraesCS1B01G393700.1 | Wheat | cytosol, peroxisome, plasma membrane | 32.21 | 28.63 |
| CDY13240 | Canola | cytosol, peroxisome, plasma membrane | 22.12 | 28.57 |
| CDX79993 | Canola | cytosol, peroxisome, plasma membrane | 34.13 | 28.29 |
| CDY42012 | Canola | cytosol, peroxisome, plasma membrane | 34.13 | 28.29 |
| TraesCS1D01G380400.1 | Wheat | cytosol, peroxisome, plasma membrane | 31.73 | 28.21 |
| CDX71213 | Canola | plasma membrane | 25.96 | 26.6 |
| Zm00001d008590_P001 | Maize | plastid | 16.83 | 26.32 |
| CDX90792 | Canola | cytosol, peroxisome, plasma membrane | 33.65 | 26.22 |
| CDY48222 | Canola | cytosol, endoplasmic reticulum, plasma membrane | 25.48 | 26.11 |
| CDY22971 | Canola | plasma membrane | 24.52 | 26.02 |
| CDX82294 | Canola | plastid | 24.52 | 26.02 |
| CDY22970 | Canola | plasma membrane | 24.52 | 26.02 |
| CDY08353 | Canola | cytosol, endoplasmic reticulum, nucleus | 31.25 | 26.0 |
| CDY48510 | Canola | cytosol | 30.29 | 25.93 |
| CDY25557 | Canola | cytosol, endoplasmic reticulum, nucleus | 31.25 | 25.9 |
| CDX67589 | Canola | golgi, plasma membrane, vacuole | 25.0 | 25.62 |
| CDY38194 | Canola | cytosol, nucleus, plasma membrane | 30.77 | 25.6 |
| CDY07184 | Canola | cytosol, peroxisome, plasma membrane | 29.81 | 25.51 |
| CDY46172 | Canola | plastid | 24.52 | 25.25 |
| CDY62522 | Canola | cytosol | 9.62 | 25.0 |
| CDX89122 | Canola | extracellular, mitochondrion | 18.27 | 24.84 |
| CDY10954 | Canola | cytosol | 32.21 | 24.81 |
| CDY57657 | Canola | cytosol, nucleus, plasma membrane | 32.69 | 24.73 |
| CDY34396 | Canola | cytosol, endoplasmic reticulum, nucleus | 29.81 | 24.7 |
| CDX99221 | Canola | plasma membrane | 24.04 | 24.63 |
| CDY51584 | Canola | plasma membrane | 24.04 | 24.63 |
| CDY24806 | Canola | cytosol | 32.21 | 24.45 |
| CDX78209 | Canola | golgi, plasma membrane, vacuole | 24.04 | 24.39 |
| CDY44123 | Canola | cytosol, nucleus, plasma membrane | 32.21 | 24.28 |
| CDY41666 | Canola | cytosol | 32.21 | 24.28 |
| CDX73507 | Canola | cytosol, golgi, plasma membrane | 23.56 | 23.9 |
| CDY08616 | Canola | plasma membrane | 26.92 | 23.43 |
| CDY00975 | Canola | cytosol, endoplasmic reticulum, peroxisome | 26.92 | 23.43 |
| CDY00916 | Canola | plasma membrane | 26.92 | 23.43 |
| CDY08567 | Canola | cytosol | 26.92 | 23.24 |
| CDY36282 | Canola | plasma membrane | 24.52 | 22.87 |
| VIT_01s0011g04030.t01 | Wine grape | cytosol | 40.87 | 22.73 |
| TraesCS3A01G051200.1 | Wheat | cytosol | 35.1 | 22.12 |
| CDY05135 | Canola | mitochondrion | 33.17 | 22.04 |
| HORVU1Hr1G083110.3 | Barley | plastid | 30.77 | 21.92 |
| GSMUA_AchrUn_... | Banana | golgi | 36.54 | 21.59 |
| HORVU3Hr1G008400.1 | Barley | cytosol, peroxisome | 34.62 | 20.69 |
| CDX86802 | Canola | cytosol, nucleus, peroxisome | 22.12 | 18.78 |
| CDX76854 | Canola | plasma membrane | 16.83 | 16.91 |
| CDY46067 | Canola | plasma membrane | 16.83 | 16.83 |
| CDX82165 | Canola | endoplasmic reticulum, peroxisome, plasma membrane, plastid | 18.27 | 15.32 |
| CDY56712 | Canola | mitochondrion | 25.0 | 14.65 |
Protein Annotations
| EnsemblPlants:CDX81500 | EnsemblPlantsGene:GSBRNA2T00135124001 | GO:A0A078CXD6 | InterPro:IPR003388 | InterPro:Reticulon | PANTHER:PTHR10994 |
| PANTHER:PTHR10994:SF124 | PFAM:PF02453 | PFscan:PS50845 | ProteinID:CDX81500 | ProteinID:CDX81500.1 | SEG:seg |
| TMHMM:TMhelix | UniParc:UPI0004EE2260 | MapMan:13.7.2.1 | : | : | : |
Description
BnaC02g18040D
Coordinates
chrLK031825:+:349436..350532
Molecular Weight (calculated)
24291.8 Da
IEP (calculated)
9.876
GRAVY (calculated)
0.218
Length
208 amino acids
Sequence
(BLAST)
(BLAST)
001: MDEHGASSSR KRRSLYHNLG GGHFADVMFW KNKKESGTIL AVFTLIWFLF EVVEYPFITF ICQILLVSIF IFLIWSYIGS SQLIQREPPS INDLKISEST
101: WRFLFNKINW FIIKLYDISS GKDFRLLVLA VVSLWILSVV GNYFSSLTLL YIVFVALETI PMLYELYEEE LNYAASKSGR DMKKLFKDFN SKVINKIPKA
201: NAKTRRHM
101: WRFLFNKINW FIIKLYDISS GKDFRLLVLA VVSLWILSVV GNYFSSLTLL YIVFVALETI PMLYELYEEE LNYAASKSGR DMKKLFKDFN SKVINKIPKA
201: NAKTRRHM
001: MAVFGYEMDE HRASSSRRRR SLYHNLGGGR FADIMFWKNK KESGTILGVF TLIWFLFEVV EYPFITFLCQ ILLLFIFIFL IWSYIGSSQL IQSKPPSIND
101: LRISESNWRF LFNKINWFII KLYDISSGKD FRLLFLAVVS LWILSVVGNY FSSLTLLYIV FVGLETIPML YEQYEEELTY AASKSGRDMK KLLNKFNSKV
201: INKIPKAQAK TRRTM
101: LRISESNWRF LFNKINWFII KLYDISSGKD FRLLFLAVVS LWILSVVGNY FSSLTLLYIV FVGLETIPML YEQYEEELTY AASKSGRDMK KLLNKFNSKV
201: INKIPKAQAK TRRTM
Arabidopsis Description
RTNLB14Reticulon-like protein [Source:UniProtKB/TrEMBL;Acc:A0A178WQE6]
SUBAcon: [plasma membrane]
SUBAcon: [plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.