Subcellular Localization
min:
: max
Winner_takes_all: peroxisome, cytosol, plasma membrane
Predictor Summary:
Predictor Summary:
- cytosol 1
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 2
- golgi 1
- peroxisome 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS1B01G393700.1 | Wheat | cytosol, peroxisome, plasma membrane | 98.72 | 98.72 |
| TraesCS1A01G373800.1 | Wheat | cytosol, peroxisome, plasma membrane | 97.44 | 97.44 |
| Zm00001d038910_P001 | Maize | plasma membrane | 69.66 | 71.81 |
| EES19907 | Sorghum | cytosol, peroxisome, plasma membrane | 68.8 | 71.24 |
| HORVU1Hr1G083110.3 | Barley | plastid | 84.19 | 67.47 |
| GSMUA_Achr8P31770_001 | Banana | peroxisome | 52.56 | 55.16 |
| GSMUA_Achr2P07230_001 | Banana | golgi, plasma membrane, vacuole | 43.16 | 48.1 |
| PGSC0003DMT400014404 | Potato | cytosol, plasma membrane, vacuole | 18.8 | 46.81 |
| PGSC0003DMT400078544 | Potato | endoplasmic reticulum, plasma membrane, vacuole | 30.34 | 46.1 |
| Solyc05g008890.2.1 | Tomato | plasma membrane | 42.31 | 44.8 |
| KRH35899 | Soybean | plasma membrane | 40.17 | 44.34 |
| VIT_17s0000g03260.t01 | Wine grape | plasma membrane | 39.74 | 43.87 |
| Solyc03g119190.2.1 | Tomato | plasma membrane | 40.6 | 43.38 |
| KRH48561 | Soybean | plasma membrane | 40.6 | 42.79 |
| KRH39144 | Soybean | plasma membrane | 40.17 | 42.34 |
| CDY66516 | Canola | endoplasmic reticulum, extracellular | 33.33 | 41.94 |
| CDY67571 | Canola | plasma membrane | 39.32 | 41.07 |
| CDX75962 | Canola | plasma membrane | 39.32 | 41.07 |
| TraesCS3D01G050800.1 | Wheat | mitochondrion | 41.03 | 41.03 |
| CDY51936 | Canola | endoplasmic reticulum, peroxisome, plasma membrane | 38.89 | 40.62 |
| Bra037594.1-P | Field mustard | plasma membrane | 38.89 | 40.62 |
| AT3G18260.1 | Thale cress | plasma membrane | 38.46 | 40.0 |
| TraesCS2D01G545200.1 | Wheat | plasma membrane | 32.05 | 37.88 |
| TraesCS1D01G349700.1 | Wheat | cytosol, nucleus, plasma membrane | 39.74 | 37.5 |
| TraesCS3D01G279100.1 | Wheat | cytosol, nucleus, plasma membrane | 39.32 | 37.1 |
| TraesCS2D01G254800.1 | Wheat | cytosol, peroxisome, vacuole | 35.04 | 33.2 |
| TraesCS7D01G337800.1 | Wheat | cytosol, peroxisome, plasma membrane, plastid | 35.47 | 31.92 |
| CDX81500 | Canola | plasma membrane | 28.21 | 31.73 |
| AT1G68230.2 | Thale cress | plasma membrane | 29.06 | 31.63 |
| TraesCS3D01G159100.1 | Wheat | cytosol, nucleus, plasma membrane | 38.46 | 31.47 |
| GSMUA_AchrUn_... | Banana | golgi | 47.01 | 31.25 |
| Bra004291.1-P | Field mustard | plasma membrane | 27.35 | 30.33 |
| CDX96038 | Canola | plasma membrane | 27.35 | 30.33 |
| TraesCS1D01G083100.2 | Wheat | mitochondrion | 37.18 | 30.1 |
| TraesCS5D01G426200.1 | Wheat | cytosol, peroxisome, plasma membrane | 32.91 | 29.73 |
| CDY01898 | Canola | plasma membrane | 26.92 | 29.72 |
| TraesCS4D01G171300.2 | Wheat | peroxisome | 27.35 | 28.19 |
| VIT_01s0011g04030.t01 | Wine grape | cytosol | 42.73 | 26.74 |
| CDY12701 | Canola | plasma membrane | 29.49 | 22.85 |
| Bra033951.1-P | Field mustard | plasma membrane | 29.06 | 22.52 |
Protein Annotations
| EnsemblPlants:TraesCS1D01G380400.1 | EnsemblPlantsGene:TraesCS1D01G380400 | InterPro:IPR003388 | InterPro:Reticulon | PANTHER:PTHR10994 | PANTHER:PTHR10994:SF81 |
| PFAM:PF02453 | PFscan:PS50845 | SEG:seg | TMHMM:TMhelix | MapMan:13.7.2.1 | : |
Description
No Description!
Coordinates
chr1D:-:455803469..455804509
Molecular Weight (calculated)
26071.9 Da
IEP (calculated)
9.836
GRAVY (calculated)
0.134
Length
234 amino acids
Sequence
(BLAST)
(BLAST)
001: MATTPRATVP HVRSDSESDD EGRRAPNVSV FRRQRPVHRF LGGRKVADVL LWRDRNLSAG MLAGATAVWF LFDVAEYNFV TLLCHAALLG MLLLFLWSVT
101: APLLGRAPPR VPEVIVSEHA FREAAMAVHR KLERSVAVLY DIACGKDLKK FLSVIGSLWV VAVIGDNCSF TTLVYVGFLC ALTLPALYER YGTEVDHLVA
201: KGGEDLQKFY RKVDANVLDK IPRGPVKSKR AHFH
101: APLLGRAPPR VPEVIVSEHA FREAAMAVHR KLERSVAVLY DIACGKDLKK FLSVIGSLWV VAVIGDNCSF TTLVYVGFLC ALTLPALYER YGTEVDHLVA
201: KGGEDLQKFY RKVDANVLDK IPRGPVKSKR AHFH
001: MPIFTGSSSD SEDERTIHKT TKLFTRQRSI HSIFGGGKVA DILLWREPKI AATLVIGVSI LWFLMEVVEY NFITLICHAS MTSMLFFFIW STASDFLNWE
101: RPLIPEVVLD ESSFKQLARS FHVRFNQILT KLLDVACGRD PPLFFLTTIS LYIVSIIGTY FNFVNLLFIG FVSMQTLPVM YEMYEDDVDT AAGKLMRKMK
201: KLYKKVDTNV LSKIPRGTVK NKKFT
101: RPLIPEVVLD ESSFKQLARS FHVRFNQILT KLLDVACGRD PPLFFLTTIS LYIVSIIGTY FNFVNLLFIG FVSMQTLPVM YEMYEDDVDT AAGKLMRKMK
201: KLYKKVDTNV LSKIPRGTVK NKKFT
Arabidopsis Description
RTNLB9Reticulon-like protein B9 [Source:UniProtKB/Swiss-Prot;Acc:Q9LJQ5]
SUBAcon: [plasma membrane]
SUBAcon: [plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.