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Sorghum
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Sorghum
Subcellular Localization
min:
: max

 
Winner_takes_all: peroxisome, cytosol, plasma membrane

Predictor Summary:
  • nucleus 1
  • cytosol 1
  • plasma membrane 3
  • extracellular 1
  • endoplasmic reticulum 1
  • vacuole 1
  • golgi 1
  • peroxisome 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol, peroxisome, plasma membrane
Any Predictor:cytosol, nucleus, peroxisome, secretory
BaCelLo:nucleus
MultiLoc:cytosol
Plant-mPloc:plasma membrane
PProwler:secretory
WoLF PSORT:plasma membrane
YLoc:peroxisome
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Zm00001d038910_P001 Maize plasma membrane 85.84 85.46
TraesCS1B01G393700.1 Wheat cytosol, peroxisome, plasma membrane 72.57 70.09
TraesCS1A01G373800.1 Wheat cytosol, peroxisome, plasma membrane 72.12 69.66
TraesCS1D01G380400.1 Wheat cytosol, peroxisome, plasma membrane 71.24 68.8
KXG33168 Sorghum golgi, peroxisome, plasma membrane 61.5 64.35
GSMUA_Achr8P31770_001 Banana peroxisome 53.54 54.26
HORVU1Hr1G083110.3 Barley plastid 67.26 52.05
GSMUA_Achr2P07230_001 Banana golgi, plasma membrane, vacuole 47.35 50.95
VIT_17s0000g03260.t01 Wine grape plasma membrane 46.02 49.06
PGSC0003DMT400078544 Potato endoplasmic reticulum, plasma membrane, vacuole 33.19 48.7
Solyc03g119190.2.1 Tomato plasma membrane 43.36 44.75
Solyc05g008890.2.1 Tomato plasma membrane 43.36 44.34
KRH48561 Soybean plasma membrane 42.92 43.69
PGSC0003DMT400014404 Potato cytosol, plasma membrane, vacuole 18.14 43.62
CDY66516 Canola endoplasmic reticulum, extracellular 35.84 43.55
KRH39144 Soybean plasma membrane 42.48 43.24
EES02516 Sorghum peroxisome, plastid 41.59 43.12
KRH35899 Soybean plasma membrane 40.27 42.92
AT3G18260.1 Thale cress plasma membrane 41.15 41.33
CDX75962 Canola plasma membrane 40.71 41.07
CDY67571 Canola plasma membrane 40.71 41.07
Bra037594.1-P Field mustard plasma membrane 40.27 40.62
CDY51936 Canola endoplasmic reticulum, peroxisome, plasma membrane 40.27 40.62
EES19841 Sorghum cytosol, nucleus, plasma membrane 41.59 36.86
KXG33320 Sorghum cytosol, nucleus, plasma membrane 42.04 36.82
CDX81500 Canola plasma membrane 33.63 36.54
KXG21632 Sorghum nucleus, peroxisome, plasma membrane 39.38 35.89
AT1G68230.2 Thale cress plasma membrane 33.63 35.35
OQU84758 Sorghum cytosol, peroxisome, plasma membrane 36.28 35.34
Bra004291.1-P Field mustard plasma membrane 32.74 35.07
CDX96038 Canola plasma membrane 32.74 35.07
CDY01898 Canola plasma membrane 32.3 34.43
EER90788 Sorghum cytosol, nucleus, plasma membrane 36.73 33.6
KXG31516 Sorghum cytosol, nucleus, plasma membrane 40.71 32.39
EES11624 Sorghum plasma membrane 28.32 32.32
EER89811 Sorghum peroxisome 35.84 31.64
GSMUA_AchrUn_... Banana golgi 48.23 30.97
EER92307 Sorghum peroxisome 29.2 28.95
OQU78555 Sorghum extracellular 26.99 27.6
VIT_01s0011g04030.t01 Wine grape cytosol 45.58 27.54
EES03891 Sorghum golgi, peroxisome, plasma membrane 24.78 26.42
KXG34376 Sorghum plasma membrane 36.28 26.11
Bra033951.1-P Field mustard plasma membrane 33.63 25.17
CDY12701 Canola plasma membrane 33.19 24.83
Protein Annotations
MapMan:13.7.2.1EntrezGene:8074554UniProt:C5YV12EnsemblPlants:EES19907ProteinID:EES19907ProteinID:EES19907.1
GO:GO:0005575GO:GO:0005622GO:GO:0005623GO:GO:0005737GO:GO:0005783GO:GO:0005789
GO:GO:0016020GO:GO:0016021InterPro:IPR003388PFAM:PF02453PFscan:PS50845PANTHER:PTHR10994
PANTHER:PTHR10994:SF81InterPro:ReticulonEnsemblPlantsGene:SORBI_3009G221800TMHMM:TMhelixUniParc:UPI0001A891F1RefSeq:XP_002441477.1
SEG:seg:::::
Description
hypothetical protein
Coordinates
chr9:-:56484791..56487061
Molecular Weight (calculated)
25456.3 Da
IEP (calculated)
8.601
GRAVY (calculated)
0.234
Length
226 amino acids
Sequence
(BLAST)
001: MSQAKVPHVQ TDSSSDDDGP TTKLVFHRRK SVDKLLGGRK VSDVLLWRNR NLSAGILAGA TLVWFLFDVV EYNVVTLLCH IALLGMLLLF IWSTAAPLFD
101: RPPPQIPEVI VSEQAFREVA QNIHYKLAHF VSILYDVACE KDLKKFLMVI GSLWILAILG DTCSFTTLLY VGFLCALTLP ALYERYETEV DHLVAKGHED
201: LKKFYKKVDS NVLNKIPRGP VKTKVL
Best Arabidopsis Sequence Match ( AT3G18260.1 )
(BLAST)
001: MPIFTGSSSD SEDERTIHKT TKLFTRQRSI HSIFGGGKVA DILLWREPKI AATLVIGVSI LWFLMEVVEY NFITLICHAS MTSMLFFFIW STASDFLNWE
101: RPLIPEVVLD ESSFKQLARS FHVRFNQILT KLLDVACGRD PPLFFLTTIS LYIVSIIGTY FNFVNLLFIG FVSMQTLPVM YEMYEDDVDT AAGKLMRKMK
201: KLYKKVDTNV LSKIPRGTVK NKKFT
Arabidopsis Description
RTNLB9Reticulon-like protein B9 [Source:UniProtKB/Swiss-Prot;Acc:Q9LJQ5]
SUBAcon: [plasma membrane]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.