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Sorghum
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Sorghum
Subcellular Localization
min:
: max

 
Winner_takes_all: peroxisome, golgi, plasma membrane

Predictor Summary:
  • plastid 1
  • golgi 2
  • extracellular 1
  • endoplasmic reticulum 1
  • vacuole 1
  • plasma membrane 2
  • peroxisome 1
Predictors GFP MS/MS Papers
Winner Takes All:golgi, peroxisome, plasma membrane
Any Predictor:golgi, peroxisome, plasma membrane, plastid
BaCelLo:plastid
MultiLoc:golgi
PProwler:secretory
WoLF PSORT:plasma membrane
YLoc:peroxisome
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Zm00001d011631_P001 Maize golgi, peroxisome, plasma membrane 90.28 88.24
Os01t0691400-00 Rice cytosol, peroxisome 77.31 72.29
TraesCS3B01G294700.1 Wheat plasma membrane 71.3 70.32
TraesCS3A01G261500.1 Wheat plasma membrane 71.3 70.32
HORVU3Hr1G064240.2 Barley plasma membrane 69.44 68.49
EES19907 Sorghum cytosol, peroxisome, plasma membrane 64.35 61.5
GSMUA_Achr8P31770_001 Banana peroxisome 52.31 50.67
GSMUA_Achr2P07230_001 Banana golgi, plasma membrane, vacuole 46.3 47.62
PGSC0003DMT400078544 Potato endoplasmic reticulum, plasma membrane, vacuole 32.87 46.1
VIT_17s0000g03260.t01 Wine grape plasma membrane 43.98 44.81
KRH35899 Soybean plasma membrane 43.98 44.81
EES02516 Sorghum peroxisome, plastid 44.91 44.5
KRH48561 Soybean plasma membrane 45.37 44.14
KRH39144 Soybean plasma membrane 45.37 44.14
CDY66516 Canola endoplasmic reticulum, extracellular 37.04 43.01
Solyc05g008890.2.1 Tomato plasma membrane 42.59 41.63
Solyc03g119190.2.1 Tomato plasma membrane 41.67 41.1
CDY51936 Canola endoplasmic reticulum, peroxisome, plasma membrane 42.13 40.62
CDX75962 Canola plasma membrane 42.13 40.62
AT3G18260.1 Thale cress plasma membrane 42.13 40.44
CDY67571 Canola plasma membrane 41.67 40.18
Bra037594.1-P Field mustard plasma membrane 41.2 39.73
AT1G68230.2 Thale cress plasma membrane 36.57 36.74
CDX81500 Canola plasma membrane 35.19 36.54
OQU84758 Sorghum cytosol, peroxisome, plasma membrane 37.96 35.34
PGSC0003DMT400014404 Potato cytosol, plasma membrane, vacuole 15.28 35.11
CDX96038 Canola plasma membrane 33.8 34.6
Bra004291.1-P Field mustard plasma membrane 33.8 34.6
KXG21632 Sorghum nucleus, peroxisome, plasma membrane 39.35 34.27
CDY01898 Canola plasma membrane 33.33 33.96
EES19841 Sorghum cytosol, nucleus, plasma membrane 38.89 32.94
EER89811 Sorghum peroxisome 38.89 32.81
KXG33320 Sorghum cytosol, nucleus, plasma membrane 38.89 32.56
EER92307 Sorghum peroxisome 32.41 30.7
KXG31516 Sorghum cytosol, nucleus, plasma membrane 39.81 30.28
GSMUA_AchrUn_... Banana golgi 48.61 29.83
EES11624 Sorghum plasma membrane 27.31 29.8
EER90788 Sorghum cytosol, nucleus, plasma membrane 33.8 29.55
EES03891 Sorghum golgi, peroxisome, plasma membrane 27.31 27.83
OQU78555 Sorghum extracellular 26.85 26.24
VIT_01s0011g04030.t01 Wine grape cytosol 44.44 25.67
CDY12701 Canola plasma membrane 34.72 24.83
Bra033951.1-P Field mustard plasma membrane 34.72 24.83
KXG34376 Sorghum plasma membrane 34.26 23.57
Protein Annotations
EnsemblPlants:KXG33168EnsemblPlantsGene:SORBI_3003G263900GO:GO:0005575GO:GO:0005622GO:GO:0005623GO:GO:0005737
GO:GO:0005783GO:GO:0005789GO:GO:0016020GO:GO:0016021InterPro:IPR003388InterPro:Reticulon
PANTHER:PTHR10994PANTHER:PTHR10994:SF81PFAM:PF02453PFscan:PS50845ProteinID:KXG33168ProteinID:KXG33168.1
SEG:segTMHMM:TMhelixUniParc:UPI00081AB9BFUniProt:A0A1B6Q5G5MapMan:13.7.2.1:
Description
hypothetical protein
Coordinates
chr3:+:60113952..60115539
Molecular Weight (calculated)
24269.0 Da
IEP (calculated)
9.812
GRAVY (calculated)
0.301
Length
216 amino acids
Sequence
(BLAST)
001: MHPNFPSDHG NGRVGGHRHK SIHRLLGGGR AADILLWKDR NLSAGVLVGA TLIWFLFEVV EYNIIPLICQ IAALAMLVIF IWSNAAPLLN IAPPRIPEVI
101: ISEHAFRQVA QIIHYKLAHT VYALYDIACG KDLKKFLLVV VSLLILSEIG SSYSFTSLLY LGFLCAHTLP ALYQRYEIEV DHLAARGSED IKRFYKRIDS
201: NFLNKIPRGP VKTKVK
Best Arabidopsis Sequence Match ( AT3G18260.1 )
(BLAST)
001: MPIFTGSSSD SEDERTIHKT TKLFTRQRSI HSIFGGGKVA DILLWREPKI AATLVIGVSI LWFLMEVVEY NFITLICHAS MTSMLFFFIW STASDFLNWE
101: RPLIPEVVLD ESSFKQLARS FHVRFNQILT KLLDVACGRD PPLFFLTTIS LYIVSIIGTY FNFVNLLFIG FVSMQTLPVM YEMYEDDVDT AAGKLMRKMK
201: KLYKKVDTNV LSKIPRGTVK NKKFT
Arabidopsis Description
RTNLB9Reticulon-like protein B9 [Source:UniProtKB/Swiss-Prot;Acc:Q9LJQ5]
SUBAcon: [plasma membrane]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.