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Barley
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Barley
Subcellular Localization
min:
: max

 
Winner_takes_all: plasma membrane

Predictor Summary:
  • plastid 2
  • cytosol 1
  • plasma membrane 3
Predictors GFP MS/MS Papers
Winner Takes All:plasma membrane
Any Predictor:cytosol, plasma membrane, plastid
BaCelLo:plastid
MultiLoc:cytosol
Plant-mPloc:plasma membrane, plastid
WoLF PSORT:plasma membrane
YLoc:plasma membrane
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
TraesCS3A01G261500.1 Wheat plasma membrane 92.24 92.24
TraesCS3B01G294700.1 Wheat plasma membrane 91.32 91.32
Os01t0691400-00 Rice cytosol, peroxisome 76.26 72.29
KXG33168 Sorghum golgi, peroxisome, plasma membrane 68.49 69.44
Zm00001d011631_P001 Maize golgi, peroxisome, plasma membrane 67.12 66.52
GSMUA_Achr8P31770_001 Banana peroxisome 49.77 48.88
VIT_17s0000g03260.t01 Wine grape plasma membrane 44.29 45.75
PGSC0003DMT400078544 Potato endoplasmic reticulum, plasma membrane, vacuole 31.51 44.81
GSMUA_Achr2P07230_001 Banana golgi, plasma membrane, vacuole 42.01 43.81
KRH48561 Soybean plasma membrane 43.38 42.79
HORVU1Hr1G083110.3 Barley plastid 56.62 42.47
KRH39144 Soybean plasma membrane 42.92 42.34
Solyc05g008890.2.1 Tomato plasma membrane 42.01 41.63
CDY66516 Canola endoplasmic reticulum, extracellular 34.7 40.86
CDY67571 Canola plasma membrane 41.1 40.18
Bra037594.1-P Field mustard plasma membrane 40.64 39.73
KRH35899 Soybean plasma membrane 38.36 39.62
CDY51936 Canola endoplasmic reticulum, peroxisome, plasma membrane 40.18 39.29
CDX75962 Canola plasma membrane 40.18 39.29
Solyc03g119190.2.1 Tomato plasma membrane 39.27 39.27
AT3G18260.1 Thale cress plasma membrane 39.27 38.22
PGSC0003DMT400014404 Potato cytosol, plasma membrane, vacuole 15.98 37.23
AT1G68230.2 Thale cress plasma membrane 33.33 33.95
CDX81500 Canola plasma membrane 31.96 33.65
HORVU3Hr1G069970.2 Barley cytosol, nucleus, plasma membrane 38.81 33.33
Bra004291.1-P Field mustard plasma membrane 31.05 32.23
CDX96038 Canola plasma membrane 31.05 32.23
CDY01898 Canola plasma membrane 31.05 32.08
HORVU1Hr1G017470.2 Barley cytosol, endoplasmic reticulum, nucleus 35.62 31.58
HORVU7Hr1G081290.4 Barley plastid 29.22 27.71
GSMUA_AchrUn_... Banana golgi 44.29 27.56
HORVU3Hr1G030760.2 Barley mitochondrion 39.27 27.39
VIT_01s0011g04030.t01 Wine grape cytosol 46.58 27.27
HORVU1Hr1G082010.3 Barley cytosol, nucleus, plasma membrane, plastid 32.42 27.2
HORVU5Hr1G101680.2 Barley cytosol, endoplasmic reticulum, peroxisome 31.96 26.82
HORVU7Hr1G075700.2 Barley mitochondrion 36.53 26.67
HORVU4Hr1G050020.1 Barley plastid 31.05 26.25
HORVU3Hr1G008400.1 Barley cytosol, peroxisome 36.99 23.28
CDY12701 Canola plasma membrane 31.96 23.18
Bra033951.1-P Field mustard plasma membrane 31.96 23.18
HORVU2Hr1G060770.16 Barley plasma membrane 35.16 20.1
HORVU2Hr1G122310.2 Barley cytosol, plasma membrane 15.98 18.82
Protein Annotations
EnsemblPlants:HORVU3Hr1G064240.2EnsemblPlantsGene:HORVU3Hr1G064240GO:GO:0005575GO:GO:0005622GO:GO:0005623GO:GO:0005737
GO:GO:0005783GO:GO:0005789GO:GO:0016020GO:GO:0016021InterPro:IPR003388InterPro:Reticulon
PANTHER:PTHR10994PANTHER:PTHR10994:SF81PFAM:PF02453PFscan:PS50845SEG:segTMHMM:TMhelix
UniParc:UPI000295B4A8UniProt:M0WW52MapMan:13.7.2.1:::
Description
Reticulon-like protein [Source:UniProtKB/TrEMBL;Acc:M0WW52]
Coordinates
chrchr3H:+:490251881..490254637
Molecular Weight (calculated)
24370.1 Da
IEP (calculated)
10.014
GRAVY (calculated)
0.253
Length
219 amino acids
Sequence
(BLAST)
001: MPPHFPSNPD HGSHVARPFH RHKSIHRILG GGKAADVLLW KNRNVSVGVL AGATLTWFLF DVVEYNVVPL LCQIAIFATL AIFIASNAAP LFDRAPPRIP
101: KVVISKHAFR EMALTIHHKL EYALSLLYDI ACGNDLKKFL MVVGSLLVLS VIGGSCSFTS LLYVGFLCAH TLPVLYQQYE TQVDHLIARG GQDIKKFYEK
201: VDSNLLNKIP RGPVKTKFR
Best Arabidopsis Sequence Match ( AT3G10260.1 )
(BLAST)
001: MPDKNIVEDV IGDLVDNFTE TVQKNKHGSS FFEQEDSVSS RFNRLFDRQK PIHHVLGGGK SADVLLWRNK KISASVLMGA TAIWVLFEWI NFHFLSLVCY
101: ALLLGMIAQF VWSNASGFLN RSQSRVPRLV LPKDFFAEVG VAVGKEVNRG LLFLQDLACK GNLKQFLMAV IGLWVAAMVG SCCNFLTVLY IGFVGAHTMP
201: VLYERYEDEV DGFMDSMIMK FHSHYKKLDT GFLSRIPSGK FGLKKRE
Arabidopsis Description
Reticulon family protein [Source:TAIR;Acc:AT3G10260]
SUBAcon: [peroxisome,cytosol,plasma membrane]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.