Factsheet for HORVU1Hr1G017470.2

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, nucleus, cytosol

Predictor Summary:

nucleus 3
cytosol 1
plasma membrane 2
extracellular 1
endoplasmic reticulum 2
vacuole 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, endoplasmic reticulum, nucleus
Any Predictor:	cytosol, nucleus, secretory
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus, plasma membrane
PProwler:	secretory
WoLF PSORT:	endoplasmic reticulum
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1B01G099200.1	Wheat	cytosol, endoplasmic reticulum, nucleus	93.93	92.8
TraesCS1A01G081500.1	Wheat	cytosol, endoplasmic reticulum, nucleus	93.52	92.03
Os05t0312500-01	Rice	plasma membrane	85.43	84.06
KXG21632	Sorghum	nucleus, peroxisome, plasma membrane	84.21	83.87
Zm00001d037848_P008	Maize	endoplasmic reticulum, nucleus, peroxisome	83.4	81.75
TraesCS1D01G083100.2	Wheat	mitochondrion	93.93	80.28
GSMUA_Achr10P...	Banana	golgi, peroxisome, plasma membrane	64.78	64.52
GSMUA_Achr6P15870_001	Banana	golgi, peroxisome, plasma membrane	61.13	60.89
GSMUA_Achr5P07570_001	Banana	golgi, peroxisome, plasma membrane	59.92	59.68
GSMUA_Achr10P...	Banana	cytosol, endoplasmic reticulum, peroxisome	46.15	57.58
HORVU3Hr1G069970.2	Barley	cytosol, nucleus, plasma membrane	55.47	53.73
Solyc06g082740.2.1	Tomato	nucleus	45.34	48.91
Solyc09g055250.2.1	Tomato	cytosol, endoplasmic reticulum, peroxisome	47.77	48.36
PGSC0003DMT400016142	Potato	endoplasmic reticulum, golgi, peroxisome	46.96	47.54
HORVU3Hr1G030760.2	Barley	mitochondrion	53.85	42.36
HORVU1Hr1G082010.3	Barley	cytosol, nucleus, plasma membrane, plastid	41.7	39.46
HORVU5Hr1G101680.2	Barley	cytosol, endoplasmic reticulum, peroxisome	37.65	35.63
HORVU3Hr1G064240.2	Barley	plasma membrane	31.58	35.62
HORVU7Hr1G081290.4	Barley	plastid	31.98	34.2
HORVU7Hr1G075700.2	Barley	mitochondrion	39.68	32.67
KRH30696	Soybean	plasma membrane	30.77	30.89
HORVU1Hr1G083110.3	Barley	plastid	33.6	28.42
HORVU4Hr1G050020.1	Barley	plastid	25.51	24.32
HORVU2Hr1G060770.16	Barley	plasma membrane	37.25	24.02
HORVU2Hr1G122310.2	Barley	cytosol, plasma membrane	17.0	22.58
HORVU3Hr1G008400.1	Barley	cytosol, peroxisome	29.96	21.26

Protein Annotations

EMBL:AK375069	EnsemblPlants:HORVU1Hr1G017470.2	EnsemblPlantsGene:HORVU1Hr1G017470	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005783	GO:GO:0005789	GO:GO:0016020	GO:GO:0016021	InterPro:IPR003388
InterPro:Reticulon	PANTHER:PTHR10994	PANTHER:PTHR10994:SF94	PFAM:PF02453	PFscan:PS50845	SEG:seg
TMHMM:TMhelix	UniParc:UPI000200897E	UniProt:F2EFZ2	MapMan:13.7.2.1	:	:

Description

Reticulon-like protein [Source:UniProtKB/TrEMBL;Acc:F2EFZ2]

Coordinates

chrchr1H:+:59535303..59537654

Molecular Weight (calculated)

27927.1 Da

IEP (calculated)

7.735

GRAVY (calculated)

0.041

Length

247 amino acids

Sequence
(BLAST)

001: MMSESEEHGS LLEKISDKIH EFKKDSSSSS SDSDDDKKSH KSKKKHLFGR KHPLHHVLGG GKAADLVMWR DKQTSGSILA GVTVIWLLFE GIGYHLLTFL
101: CHLLIVFLTV SFVWSNAASF INRSPPKLPE VILSETQCLM IAHVLRKEIN EAFLTLQNVA SGKDLKTYLT SIGVLWFISI IGGCFSFLTL SYTLFLMAYT
201: LPMLYEKYED EVDVVGEKAL IEIKKQYVVF DEKVLSKIPM LADKKQH

Best Arabidopsis Sequence Match ( AT2G46170.1 )
(BLAST)

001: MAEEIEKSVP TEESLMEKIS EKIHHHDSSS SSESEYEKPD SPSAVKAKIY RMFGREKPVH KVLGGGKPAD VFLWRDKKLS GAVLGVATAI WVLFELVEYH
101: LLSLLCHISI LALGGLFLWS NAHTLINKTS PQIPEIHVPE EAFLVVASSL RNELNQAFVI LRSIALGRDL KKFLMVVVGL WIISVVGNWF NFLTLVYICF
201: VILHTVPMLY EKHEDKVDPL AEKAMKELQK QYVVFDEKVL SKIPIASLKA KAKLG

Arabidopsis Description

RTNLB5Reticulon-like protein B5 [Source:UniProtKB/Swiss-Prot;Acc:O82352]
SUBAcon: [plasma membrane,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.