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Barley
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Barley
Subcellular Localization
min:
: max

 
Winner_takes_all: plasma membrane, plastid, nucleus, cytosol

Predictor Summary:
  • nucleus 2
  • cytosol 1
  • peroxisome 1
  • extracellular 1
  • endoplasmic reticulum 1
  • vacuole 1
  • plasma membrane 2
  • golgi 1
  • plastid 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol, nucleus, plasma membrane, plastid
Any Predictor:cytosol, nucleus, peroxisome, plastid, secretory
BaCelLo:nucleus
MultiLoc:cytosol
Plant-mPloc:peroxisome
PProwler:secretory
TargetP:plastid
WoLF PSORT:plasma membrane
YLoc:nucleus
PPI

Inferred distinct locusB in Crop

locusBlocations
HORVU0Hr1G002680.2
HORVU1Hr1G023500.9
HORVU1Hr1G028520.1
HORVU1Hr1G028870.1
HORVU1Hr1G047990.4
HORVU1Hr1G069080.4
HORVU1Hr1G072070.1
HORVU1Hr1G082010.3
HORVU1Hr1G093680.1
HORVU1Hr1G093720.5
HORVU1Hr1G095120.1
HORVU2Hr1G005680.1
HORVU2Hr1G006030.4
HORVU2Hr1G063710.1
HORVU2Hr1G063720.1
HORVU2Hr1G067170.1
HORVU2Hr1G078290.3
HORVU2Hr1G093180.1
HORVU3Hr1G018940.2
HORVU3Hr1G030760.2
HORVU3Hr1G044700.1
HORVU3Hr1G052820.4
HORVU3Hr1G069970.2
HORVU3Hr1G077280.2
HORVU3Hr1G077290.1
HORVU3Hr1G086830.7
HORVU3Hr1G094550.2
HORVU3Hr1G108010.6
HORVU4Hr1G007060.2
HORVU4Hr1G058460.1
HORVU5Hr1G029200.4
HORVU5Hr1G112790.2
HORVU6Hr1G009670.1
HORVU6Hr1G034030.2
HORVU6Hr1G054760.4
HORVU7Hr1G075380.6
HORVU7Hr1G075700.2
HORVU7Hr1G081290.4
HORVU7Hr1G094010.8
HORVU7Hr1G094050.2

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT4G11220.1 HORVU1Hr1G023500.9 AT1G09330.1 21798944
AT4G11220.1 HORVU1Hr1G028870.1 AT3G59500.1 21798944
AT4G11220.1 HORVU6Hr1G034030.2 AT3G59500.1 21798944
AT4G11220.1 HORVU7Hr1G094010.8 AT3G59500.1 21798944
AT4G11220.1 HORVU7Hr1G094050.2 AT3G59500.1 21798944
AT5G41600.1 HORVU1Hr1G028520.1 AT1G55190.1 21798944
AT5G41600.1 HORVU3Hr1G018940.2 AT1G55190.1 21798944
AT5G41600.1 HORVU1Hr1G069080.4 AT1G77350.1 21798944
AT5G41600.1 HORVU3Hr1G108010.6 AT2G03120.1 21798944
AT5G41600.1 HORVU6Hr1G009670.1 AT2G03120.1 21798944
AT5G41600.1 HORVU2Hr1G078290.3 AT2G39960.1 21798944
AT5G41600.1 HORVU4Hr1G058460.1 AT2G39960.1 21798944
AT5G41600.1 HORVU2Hr1G005680.1 AT2G46890.1 21798944
AT5G41600.1 HORVU2Hr1G093180.1 AT2G46890.1 21798944
AT5G41600.1 HORVU1Hr1G093680.1 AT3G02420.1 21798944
AT5G41600.1 HORVU1Hr1G093720.5 AT3G02420.1 21798944
AT5G41600.1 HORVU1Hr1G095120.1 AT3G02420.1 21798944
AT5G41600.1 HORVU2Hr1G063710.1 AT3G02420.1 21798944
AT5G41600.1 HORVU2Hr1G063720.1 AT3G02420.1 21798944
AT5G41600.1 HORVU2Hr1G067170.1 AT3G02420.1 21798944
AT5G41600.1 HORVU3Hr1G044700.1 AT3G02420.1 21798944
AT5G41600.1 HORVU3Hr1G052820.4 AT3G02420.1 21798944
AT5G41600.1 HORVU3Hr1G077280.2 AT3G02420.1 21798944
AT5G41600.1 HORVU3Hr1G077290.1 AT3G02420.1 21798944
AT5G41600.1 HORVU4Hr1G007060.2 AT3G02420.1 21798944
AT5G41600.1 HORVU5Hr1G029200.4 AT3G02420.1 21798944
AT5G41600.1 HORVU6Hr1G054760.4 AT3G02420.1 21798944
AT5G41600.1 HORVU0Hr1G002680.2 AT3G07950.1 21798944
AT5G41600.1 HORVU2Hr1G006030.4 AT3G07950.1 21798944
AT5G41600.1 HORVU3Hr1G094550.2 AT3G27080.1 21798944
AT5G41600.1 HORVU7Hr1G075380.6 AT3G27080.1 21798944
AT5G41600.1 HORVU1Hr1G072070.1 AT3G46060.1 21798944
AT5G41600.1 HORVU3Hr1G086830.7 AT3G46060.1 21798944
AT5G41600.1 HORVU5Hr1G112790.2 AT3G46060.1 21798944
AT5G41600.1 HORVU1Hr1G028870.1 AT3G59500.1 21798944
AT5G41600.1 HORVU6Hr1G034030.2 AT3G59500.1 21798944
AT5G41600.1 HORVU7Hr1G094010.8 AT3G59500.1 21798944
AT5G41600.1 HORVU7Hr1G094050.2 AT3G59500.1 21798944
AT5G41600.1 HORVU1Hr1G082010.3 AT5G41600.1 21798944
AT5G41600.1 HORVU3Hr1G030760.2 AT5G41600.1 21798944
AT5G41600.1 HORVU3Hr1G069970.2 AT5G41600.1 21798944
AT5G41600.1 HORVU7Hr1G075700.2 AT5G41600.1 21798944
AT5G41600.1 HORVU7Hr1G081290.4 AT5G41600.1 21798944
AT5G41600.1 HORVU1Hr1G047990.4 AT5G53560.1 21798944
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
TraesCS1A01G346800.3 Wheat plasma membrane 87.74 90.87
TraesCS1D01G349700.1 Wheat cytosol, nucleus, plasma membrane 68.58 72.18
TraesCS1B01G360800.1 Wheat cytosol, nucleus, plasma membrane 68.58 71.89
Zm00001d020729_P001 Maize plasma membrane 22.99 63.16
Os05t0526400-01 Rice plasma membrane 60.54 62.95
EES19841 Sorghum cytosol, nucleus, plasma membrane 61.3 62.75
Zm00001d038768_P001 Maize extracellular, mitochondrion 60.15 61.81
KRG99174 Soybean endoplasmic reticulum, plasma membrane 19.54 58.62
HORVU3Hr1G069970.2 Barley cytosol, nucleus, plasma membrane 57.09 58.43
VIT_02s0025g00590.t01 Wine grape mitochondrion 13.03 56.67
Zm00001d020229_P001 Maize plasma membrane 30.65 52.63
CDY25557 Canola cytosol, endoplasmic reticulum, nucleus 50.57 52.59
VIT_02s0025g00640.t01 Wine grape cytosol, nucleus, plasma membrane 50.57 52.38
CDY34396 Canola cytosol, endoplasmic reticulum, nucleus 50.19 52.19
Bra027678.1-P Field mustard cytosol, endoplasmic reticulum, nucleus 50.19 52.19
VIT_15s0046g01760.t01 Wine grape cytosol, peroxisome, plasma membrane 50.96 52.16
CDY38194 Canola cytosol, nucleus, plasma membrane 49.81 52.0
CDY08353 Canola cytosol, endoplasmic reticulum, nucleus 49.43 51.6
Bra027757.1-P Field mustard cytosol, endoplasmic reticulum, peroxisome 49.04 51.2
KRH41254 Soybean cytosol, nucleus, plasma membrane 49.81 51.18
KRH40357 Soybean endoplasmic reticulum 50.19 50.97
CDX79993 Canola cytosol, peroxisome, plasma membrane 48.66 50.6
Bra004562.1-P Field mustard cytosol, peroxisome, plasma membrane 48.66 50.6
CDY42012 Canola cytosol, peroxisome, plasma membrane 48.28 50.2
KRH00872 Soybean endoplasmic reticulum 49.81 50.19
KRH06560 Soybean endoplasmic reticulum 48.66 49.61
KRH59988 Soybean mitochondrion 48.28 49.61
PGSC0003DMT400000230 Potato cytosol, nucleus, plasma membrane 50.19 49.43
PGSC0003DMT400049928 Potato cytosol, nucleus, plasma membrane 48.28 49.41
Solyc03g007740.2.1 Tomato nucleus 48.28 49.41
AT2G46170.1 Thale cress cytosol, nucleus, plasma membrane 48.28 49.41
AT4G23630.2 Thale cress nucleus 51.34 48.73
Solyc01g095200.2.1 Tomato plastid 49.04 48.67
Solyc10g011870.2.1 Tomato cytosol, nucleus, plasma membrane 48.66 48.29
AT5G41600.1 Thale cress cytosol, nucleus, plasma membrane 47.51 48.25
PGSC0003DMT400051387 Potato cytosol, nucleus, plasma membrane 47.13 48.24
CDY10954 Canola cytosol 49.81 48.15
Bra019285.1-P Field mustard cytosol 49.43 48.13
CDX90792 Canola cytosol, peroxisome, plasma membrane 49.04 47.94
Solyc06g036430.2.1 Tomato cytosol, nucleus, plasma membrane 46.36 47.83
CDY52012 Canola cytosol, peroxisome, plasma membrane 46.36 47.64
Bra000739.1-P Field mustard cytosol 48.66 47.57
CDY24806 Canola cytosol 49.81 47.45
PGSC0003DMT400074360 Potato cytosol, nucleus, plasma membrane 45.98 47.43
AT1G64090.2 Thale cress cytosol, endoplasmic reticulum, nucleus 49.04 47.23
Bra010539.1-P Field mustard cytosol 48.66 47.21
CDY44123 Canola cytosol, nucleus, plasma membrane 49.81 47.1
Solyc08g081730.2.1 Tomato endoplasmic reticulum, plastid 48.66 47.04
PGSC0003DMT400032086 Potato cytosol, nucleus, plasma membrane 48.66 47.04
CDY57657 Canola cytosol, nucleus, plasma membrane 49.43 46.91
VIT_16s0050g01790.t01 Wine grape cytosol, nucleus, plasma membrane 45.59 46.85
Bra003455.1-P Field mustard cytosol, peroxisome, plasma membrane 45.59 46.85
CDY53913 Canola cytosol, peroxisome, plasma membrane 45.59 46.85
CDY41666 Canola cytosol 49.43 46.74
AT3G61560.1 Thale cress cytosol, nucleus, plasma membrane 45.21 46.64
Bra013717.1-P Field mustard nucleus 49.04 46.38
CDY62522 Canola cytosol 14.18 46.25
AT4G11220.1 Thale cress nucleus 47.51 45.76
KRH48008 Soybean cytosol, peroxisome, plasma membrane 50.19 41.72
HORVU1Hr1G017470.2 Barley cytosol, endoplasmic reticulum, nucleus 39.46 41.7
KRH35223 Soybean cytosol, nucleus, plasma membrane 39.85 41.6
CDY05135 Canola mitochondrion 49.43 41.21
HORVU3Hr1G030760.2 Barley mitochondrion 49.43 41.08
AT4G01230.2 Thale cress cytosol 37.16 39.75
CDY48510 Canola cytosol 36.78 39.51
Bra037369.1-P Field mustard cytosol 36.78 39.51
CDY07184 Canola cytosol, peroxisome, plasma membrane 36.4 39.09
CDY13240 Canola cytosol, peroxisome, plasma membrane 21.46 34.78
HORVU7Hr1G075700.2 Barley mitochondrion 39.85 34.67
HORVU7Hr1G081290.4 Barley plastid 30.65 34.63
HORVU5Hr1G101680.2 Barley cytosol, endoplasmic reticulum, peroxisome 33.33 33.33
VIT_07s0031g02730.t01 Wine grape golgi, mitochondrion, nucleus, plasma membrane 22.61 32.78
HORVU3Hr1G064240.2 Barley plasma membrane 27.2 32.42
KRG91601 Soybean mitochondrion 39.46 30.29
CDX86802 Canola cytosol, nucleus, peroxisome 24.52 26.12
Bra035242.1-P Field mustard cytosol 19.16 25.0
HORVU1Hr1G083110.3 Barley plastid 27.2 24.32
HORVU4Hr1G050020.1 Barley plastid 23.37 23.55
HORVU2Hr1G060770.16 Barley plasma membrane 32.18 21.93
HORVU3Hr1G008400.1 Barley cytosol, peroxisome 27.2 20.4
HORVU2Hr1G122310.2 Barley cytosol, plasma membrane 13.03 18.28
CDX89122 Canola extracellular, mitochondrion 9.2 15.69
Protein Annotations
EnsemblPlants:HORVU1Hr1G082010.3EnsemblPlantsGene:HORVU1Hr1G082010GO:GO:0005575GO:GO:0005622GO:GO:0005623GO:GO:0005737
GO:GO:0005783GO:GO:0005789GO:GO:0016020GO:GO:0016021InterPro:IPR003388InterPro:Reticulon
PANTHER:PTHR10994PANTHER:PTHR10994:SF99PFAM:PF02453PFscan:PS50845SEG:segTMHMM:TMhelix
UniParc:UPI000294A87BUniProt:M0VFE3MapMan:13.7.2.1:::
Description
Reticulon-like protein [Source:UniProtKB/TrEMBL;Acc:M0VFE3]
Coordinates
chrchr1H:-:528533543..528535826
Molecular Weight (calculated)
28534.9 Da
IEP (calculated)
9.327
GRAVY (calculated)
0.201
Length
261 amino acids
Sequence
(BLAST)
001: MSEQGAGQGS KEESLMDKIT EKFHGSSSSS SSSDDEAGRA AGSSSSSVKA KIYRLFGREK PVHSVLGGGK PADLLLWRNK KISGGVLAGA TTIWLLFEVL
101: EYHLLTLLCH GFILTLGILF LWSNASAFVN KCPPNIPEVK IPEDLAVNVA RSLRYEINRG FASLRAIGQG RDLKKFLIVV AGLWILSALG SSCNFLTLFY
201: IGKCSLLLQY VTCICAIGLP SFVSLIMPSC LQSSWYSTPC LSCTRSMRTR LMLLERRPWS N
Best Arabidopsis Sequence Match ( AT1G64090.1 )
(BLAST)
001: MAEEHKHEES IMEKISEKIH GHDDSSSSSS DSDDDKNSAS LKTKIYRLFG REQPLHKLFG GGKPADIFLW RNKKVSGGVL GAATVSWILF ELLEYNLLTL
101: FGHISILALA VLFLWSSAST FIHKSPLHIP EVHIPEDVVL QLASGLRIEI NRGFTVLRDI ASGRDLKKFL LVIAGLWVLS KVGSSCNFLT LIYIATVLLF
201: TIPVLYEKYE DKVDDFGEKA MREIKKQYVE FDVKVLSKVM SKIPKGAFAF IKKKD
Arabidopsis Description
RTNLB3Reticulon-like protein [Source:UniProtKB/TrEMBL;Acc:F4I596]
SUBAcon: [endoplasmic reticulum,nucleus,cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.