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Field mustard
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Field mustard
Subcellular Localization
min:
: max

 
Winner_takes_all: endoplasmic reticulum, nucleus, cytosol

Predictor Summary:
  • nucleus 2
  • cytosol 1
  • plastid 1
  • extracellular 1
  • endoplasmic reticulum 2
  • vacuole 1
  • plasma membrane 1
  • golgi 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol, endoplasmic reticulum, nucleus
Any Predictor:cytosol, nucleus, plastid, secretory
BaCelLo:nucleus
MultiLoc:cytosol
Plant-mPloc:plastid
PProwler:secretory
WoLF PSORT:endoplasmic reticulum
YLoc:nucleus
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY34396 Canola cytosol, endoplasmic reticulum, nucleus 98.8 98.8
Bra027757.1-P Field mustard cytosol, endoplasmic reticulum, peroxisome 96.41 96.8
AT1G64090.2 Thale cress cytosol, endoplasmic reticulum, nucleus 85.66 79.34
VIT_02s0025g00640.t01 Wine grape cytosol, nucleus, plasma membrane 70.52 70.24
KRH41254 Soybean cytosol, nucleus, plasma membrane 66.93 66.14
KRH59988 Soybean mitochondrion 66.93 66.14
VIT_15s0046g01760.t01 Wine grape cytosol, peroxisome, plasma membrane 65.74 64.71
Bra004562.1-P Field mustard cytosol, peroxisome, plasma membrane 64.14 64.14
TraesCS3D01G279100.1 Wheat cytosol, nucleus, plasma membrane 63.35 64.11
TraesCS3A01G278800.1 Wheat golgi 63.35 64.11
TraesCS3B01G313000.1 Wheat cytosol, nucleus, plasma membrane 64.14 63.64
Os01t0736900-01 Rice plasma membrane 64.14 63.64
TraesCS1D01G349700.1 Wheat cytosol, nucleus, plasma membrane 62.55 63.31
Bra000739.1-P Field mustard cytosol 67.33 63.3
Bra010539.1-P Field mustard cytosol 67.73 63.2
HORVU3Hr1G069970.2 Barley cytosol, nucleus, plasma membrane 64.14 63.14
Bra019285.1-P Field mustard cytosol 67.33 63.06
TraesCS1B01G360800.1 Wheat cytosol, nucleus, plasma membrane 62.55 63.05
Bra013717.1-P Field mustard nucleus 69.32 63.04
Zm00001d043551_P003 Maize plasma membrane 64.54 63.03
GSMUA_Achr9P05440_001 Banana nucleus, peroxisome, plasma membrane 62.95 62.95
GSMUA_Achr8P27830_001 Banana cytosol, peroxisome, plasma membrane 62.95 62.95
Os05t0526400-01 Rice plasma membrane 62.55 62.55
KXG33320 Sorghum cytosol, nucleus, plasma membrane 64.14 62.4
EES19841 Sorghum cytosol, nucleus, plasma membrane 62.55 61.57
Zm00001d012776_P001 Maize extracellular 61.75 61.26
GSMUA_AchrUn_... Banana cytosol, nucleus, plasma membrane 62.95 61.24
Os01t0226300-01 Rice plasma membrane 43.43 61.24
GSMUA_Achr6P31860_001 Banana cytosol, nucleus, plasma membrane 61.35 61.11
GSMUA_Achr10P... Banana cytosol, endoplasmic reticulum, plasma membrane 60.56 60.32
Zm00001d038768_P001 Maize extracellular, mitochondrion 60.96 60.24
GSMUA_Achr3P31920_001 Banana cytosol 52.19 59.82
Solyc08g081730.2.1 Tomato endoplasmic reticulum, plastid 64.14 59.63
PGSC0003DMT400032086 Potato cytosol, nucleus, plasma membrane 64.14 59.63
Bra003455.1-P Field mustard cytosol, peroxisome, plasma membrane 60.16 59.45
GSMUA_Achr4P08400_001 Banana cytosol 59.36 58.89
Zm00001d020229_P001 Maize plasma membrane 33.86 55.92
Zm00001d020729_P001 Maize plasma membrane 21.12 55.79
Zm00001d008982_P001 Maize cytosol, nucleus, plasma membrane 61.75 55.56
GSMUA_Achr5P06850_001 Banana cytosol, nucleus, plasma membrane 54.98 55.2
KXG31516 Sorghum cytosol, nucleus, plasma membrane 62.15 54.93
TraesCS3B01G178100.1 Wheat cytosol, nucleus, plasma membrane 62.55 54.9
TraesCS3D01G159100.1 Wheat cytosol, nucleus, plasma membrane 62.15 54.55
TraesCS1A01G346800.3 Wheat plasma membrane 52.19 51.98
Zm00001d039316_P001 Maize cytosol, nucleus, plasma membrane 62.55 51.31
Os02t0265900-01 Rice cytosol, peroxisome, plasma membrane 47.01 51.3
HORVU1Hr1G082010.3 Barley cytosol, nucleus, plasma membrane, plastid 52.19 50.19
Zm00001d016041_P001 Maize extracellular 45.82 50.0
HORVU3Hr1G030760.2 Barley mitochondrion 61.35 49.04
OQU84758 Sorghum cytosol, peroxisome, plasma membrane 45.02 48.71
TraesCS7B01G241100.1 Wheat cytosol, peroxisome, plasma membrane, plastid 50.2 48.46
TraesCS7A01G341800.1 Wheat cytosol, peroxisome, plasma membrane, plastid 50.2 48.46
TraesCS3A01G151200.1 Wheat cytosol, peroxisome, plasma membrane 62.15 48.45
EER89811 Sorghum peroxisome 49.4 48.44
Os06t0503400-01 Rice plasma membrane 51.0 48.3
TraesCS7D01G337800.1 Wheat cytosol, peroxisome, plasma membrane, plastid 49.8 48.08
Zm00001d037453_P001 Maize cytosol, peroxisome, plasma membrane 49.8 47.89
Bra037369.1-P Field mustard cytosol 43.82 45.27
HORVU7Hr1G081290.4 Barley plastid 38.65 41.99
HORVU7Hr1G075700.2 Barley mitochondrion 49.8 41.67
Bra035242.1-P Field mustard cytosol 32.27 40.5
GSMUA_Achr3P15760_001 Banana cytosol 23.11 38.67
Bra037594.1-P Field mustard plasma membrane 32.27 36.16
Bra029827.1-P Field mustard plasma membrane 34.26 35.98
Bra003171.1-P Field mustard plasma membrane 29.08 35.96
VIT_07s0031g02730.t01 Wine grape golgi, mitochondrion, nucleus, plasma membrane 25.5 35.56
Bra001748.1-P Field mustard plastid 27.09 34.69
Bra007047.1-P Field mustard golgi, plasma membrane, vacuole 27.49 33.66
Bra040612.1-P Field mustard plasma membrane 23.51 32.24
Bra029878.1-P Field mustard cytosol, peroxisome, plasma membrane 29.08 30.54
Bra004291.1-P Field mustard plasma membrane 25.5 30.33
Bra022426.1-P Field mustard cytosol, plasma membrane, plastid 29.48 30.33
Bra034153.1-P Field mustard plasma membrane 26.69 30.04
Bra039207.1-P Field mustard plasma membrane 19.92 24.04
Bra033951.1-P Field mustard plasma membrane 25.1 20.86
Protein Annotations
EnsemblPlants:Bra027678.1EnsemblPlants:Bra027678.1-PEnsemblPlantsGene:Bra027678GO:GO:0005575GO:GO:0005622GO:GO:0005623
GO:GO:0005737GO:GO:0005783GO:GO:0005789GO:GO:0016020GO:GO:0016021InterPro:IPR003388
InterPro:ReticulonPANTHER:PTHR10994PANTHER:PTHR10994:SF70PFAM:PF02453PFscan:PS50845SEG:seg
TMHMM:TMhelixUniParc:UPI000254238DUniProt:M4EFW5MapMan:13.7.2.1::
Description
AT1G64090 (E=6e-103) | reticulon family protein (RTNLB3)
Coordinates
chrA09:-:6974508..6975647
Molecular Weight (calculated)
28334.9 Da
IEP (calculated)
10.075
GRAVY (calculated)
-0.019
Length
251 amino acids
Sequence
(BLAST)
001: MAEEHKHEES IMEKIAEKIH GHDNSSSSDS DDEKKASSIK TKIFRLFGRE KPVHKVFGGG KPADIFLWRN KKVSGGVLGA ATLSWILFEL LQYNLLTLFG
101: HVSILALAVL FLWSSATTFI HKKPPHIPEV HIPEEVALQL ASGLRIEINR GFTILRNIAL GRELKKFLMV VAGLWVLSKV GSSCNFLTLI YIATVLLFTV
201: PVFYEKYEDK VDHFGEKAMK EIKKQYAVLD EKVLSKVMSK IPRGAFNKKK D
Best Arabidopsis Sequence Match ( AT1G64090.1 )
(BLAST)
001: MAEEHKHEES IMEKISEKIH GHDDSSSSSS DSDDDKNSAS LKTKIYRLFG REQPLHKLFG GGKPADIFLW RNKKVSGGVL GAATVSWILF ELLEYNLLTL
101: FGHISILALA VLFLWSSAST FIHKSPLHIP EVHIPEDVVL QLASGLRIEI NRGFTVLRDI ASGRDLKKFL LVIAGLWVLS KVGSSCNFLT LIYIATVLLF
201: TIPVLYEKYE DKVDDFGEKA MREIKKQYVE FDVKVLSKVM SKIPKGAFAF IKKKD
Arabidopsis Description
RTNLB3Reticulon-like protein [Source:UniProtKB/TrEMBL;Acc:F4I596]
SUBAcon: [endoplasmic reticulum,nucleus,cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.