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Field mustard
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Field mustard
Subcellular Localization
min:
: max

 
Winner_takes_all: plasma membrane, plastid, cytosol

Predictor Summary:
  • plastid 2
  • mitochondrion 1
  • cytosol 1
  • plasma membrane 3
  • extracellular 1
  • endoplasmic reticulum 1
  • vacuole 1
  • golgi 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol, plasma membrane, plastid
Any Predictor:cytosol, mitochondrion, plastid, secretory
BaCelLo:plastid
iPSORT:mitochondrion
MultiLoc:cytosol
Plant-mPloc:plasma membrane
PProwler:secretory
WoLF PSORT:plasma membrane
YLoc:plastid
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY46172 Canola plastid 80.74 97.52
Bra001748.1-P Field mustard plastid 71.31 88.78
AT3G19460.3 Thale cress plasma membrane 68.85 71.79
GSMUA_Achr7P05440_001 Banana peroxisome, plasma membrane, vacuole 45.49 49.78
Zm00001d001901_P002 Maize plasma membrane 39.75 48.99
EES11624 Sorghum plasma membrane 39.75 48.99
Bra040612.1-P Field mustard plasma membrane 36.48 48.63
Zm00001d026575_P001 Maize mitochondrion, peroxisome, plasma membrane, plastid, vacuole 38.93 47.98
Os04t0670000-01 Rice plasma membrane 38.93 47.74
TraesCS2A01G544000.1 Wheat plasma membrane 38.52 47.24
TraesCS2D01G545200.1 Wheat plasma membrane 38.11 46.97
TraesCS2B01G574200.2 Wheat plasma membrane 37.7 46.23
GSMUA_Achr4P20190_001 Banana cytosol, plastid 44.67 38.65
Bra003171.1-P Field mustard plasma membrane 29.51 35.47
HORVU2Hr1G122310.2 Barley cytosol, plasma membrane 25.41 33.33
Bra007047.1-P Field mustard golgi, plasma membrane, vacuole 27.05 32.2
Bra029878.1-P Field mustard cytosol, peroxisome, plasma membrane 30.74 31.38
Bra034153.1-P Field mustard plasma membrane 27.87 30.49
Bra027678.1-P Field mustard cytosol, endoplasmic reticulum, nucleus 30.33 29.48
Bra027757.1-P Field mustard cytosol, endoplasmic reticulum, peroxisome 29.51 28.8
Bra004562.1-P Field mustard cytosol, peroxisome, plasma membrane 29.1 28.29
Bra029827.1-P Field mustard plasma membrane 27.05 27.62
Bra019285.1-P Field mustard cytosol 30.33 27.61
Bra013717.1-P Field mustard nucleus 30.74 27.17
Bra003455.1-P Field mustard cytosol, peroxisome, plasma membrane 27.87 26.77
Bra000739.1-P Field mustard cytosol 29.1 26.59
Bra010539.1-P Field mustard cytosol 28.28 25.65
Bra037594.1-P Field mustard plasma membrane 23.36 25.45
Bra004291.1-P Field mustard plasma membrane 21.31 24.64
Bra039207.1-P Field mustard plasma membrane 20.49 24.04
Bra037369.1-P Field mustard cytosol 22.95 23.05
Bra035242.1-P Field mustard cytosol 15.16 18.5
Bra033951.1-P Field mustard plasma membrane 21.31 17.22
Protein Annotations
EnsemblPlants:Bra022426.1EnsemblPlants:Bra022426.1-PEnsemblPlantsGene:Bra022426GO:GO:0005575GO:GO:0005622GO:GO:0005623
GO:GO:0005737GO:GO:0005783GO:GO:0005789GO:GO:0016020GO:GO:0016021InterPro:IPR003388
InterPro:ReticulonPANTHER:PTHR10994PANTHER:PTHR10994:SF65PFAM:PF02453PFscan:PS50845SEG:seg
TMHMM:TMhelixUniParc:UPI0002547DBCUniProt:M4E0X9MapMan:13.7.2.1::
Description
AT3G19460 (E=4e-068) | reticulon family protein (RTNLB11)
Coordinates
chrA05:-:17764375..17765602
Molecular Weight (calculated)
27371.8 Da
IEP (calculated)
9.280
GRAVY (calculated)
0.485
Length
244 amino acids
Sequence
(BLAST)
001: MGDSASSSSS SSRVFVHNSL GGGSGESFSL YHSNRLSDYH QSLIEILRVC LSIQLLIFEI LRLELADLLL WRNRTGAVIV LVSSTVFWFL FERAGYNLLS
101: FVSNVLLLLV AILFLWAKSA SLLNRPLPPV PNMEIPEEFV VKVADDIRVL INRVLSIASD ITVARNPIRL LQMSLVLWAI SYVGTLINSL TLVYIGILLS
201: LSVPIVYEKY QDHIDDKLNS TSKVIRSISM KIPMMPVSKE KKYQ
Best Arabidopsis Sequence Match ( AT3G19460.1 )
(BLAST)
001: MGDSVSSSSR VSVHQSLGAG SVADLLLWRN RTGAVILLIS STGFWFLFER AGYNLLSFVS NVLLLLVAIF FLWAKSATVL NRPLPPVPNM EIPEEFANKA
101: ADDLRVWINY VLSIASDITI ARNPIRLLQV SLVLWAISYV GTLINSLTLV YIGVLLSLSF PIVYEKYQDH IDEKVNSTSK FVRNISRKFP LPINKEKKHQ
Arabidopsis Description
Reticulon-like protein [Source:UniProtKB/TrEMBL;Acc:A0A1I9LL94]
SUBAcon: [plasma membrane]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.