Factsheet for Bra003171.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

plastid 1
plasma membrane 4
extracellular 1
golgi 1
endoplasmic reticulum 1
vacuole 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	plastid, secretory
BaCelLo:	plastid
MultiLoc:	plasma membrane
Plant-mPloc:	plasma membrane
PProwler:	secretory
WoLF PSORT:	vacuole
YLoc:	plasma membrane

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra000739.1-P
Bra005951.1-P
Bra006975.1-P
Bra018954.1-P
Bra027937.1-P
Bra028548.1-P
Bra035242.1-P
Bra038169.1-P
Bra041043.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G54120.1	Bra018954.1-P	AT1G52220.1	21798944
AT3G54120.1	Bra027937.1-P	AT1G56330.1	21798944
AT3G54120.1	Bra038169.1-P	AT1G56330.1	21798944
AT3G54120.1	Bra041043.1-P	AT2G20130.1	21798944
AT3G54120.1	Bra006975.1-P	AT3G53180.1	21798944
AT3G54120.1	Bra028548.1-P	AT3G53180.1	21798944
AT3G54120.1	Bra000739.1-P	AT4G11220.1	21798944
AT3G54120.1	Bra035242.1-P	AT4G11220.1	21798944
AT3G54120.1	Bra005951.1-P	AT5G07730.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX67589	Canola	golgi, plasma membrane, vacuole	99.01	99.01
Bra007047.1-P	Field mustard	golgi, plasma membrane, vacuole	82.76	81.95
AT3G54120.1	Thale cress	cytosol, plasma membrane, vacuole	78.33	78.33
KRH75801	Soybean	plasma membrane	56.16	54.55
KRH66004	Soybean	endoplasmic reticulum, golgi, plasma membrane	55.66	54.07
VIT_08s0007g01720.t01	Wine grape	plasma membrane	55.66	54.07
PGSC0003DMT400052428	Potato	cytosol, plasma membrane, vacuole	54.19	52.63
Solyc09g013110.2.1	Tomato	cytosol, plasma membrane, vacuole	52.71	51.2
GSMUA_Achr10P...	Banana	plasma membrane	49.26	43.48
Os04t0367400-02	Rice	plasma membrane	40.89	38.97
GSMUA_Achr8P02250_001	Banana	cytosol, mitochondrion, peroxisome, plasma membrane	46.31	38.06
Zm00001d042846_P001	Maize	plasma membrane	38.42	37.14
OQU78555	Sorghum	extracellular	39.9	36.65
EES03891	Sorghum	golgi, peroxisome, plasma membrane	37.93	36.32
GSMUA_Achr6P33560_001	Banana	plasma membrane	46.8	35.98
Bra001748.1-P	Field mustard	plastid	33.99	35.2
Os01t0851300-01	Rice	golgi, plasma membrane, vacuole	33.5	33.5
Bra040612.1-P	Field mustard	plasma membrane	28.08	31.15
Bra029878.1-P	Field mustard	cytosol, peroxisome, plasma membrane	35.47	30.13
Bra034153.1-P	Field mustard	plasma membrane	32.51	29.6
Bra022426.1-P	Field mustard	cytosol, plasma membrane, plastid	35.47	29.51
Zm00001d039213_P001	Maize	golgi, plasma membrane, plastid	33.99	29.49
Bra027678.1-P	Field mustard	cytosol, endoplasmic reticulum, nucleus	35.96	29.08
Bra004562.1-P	Field mustard	cytosol, peroxisome, plasma membrane	34.48	27.89
Bra003455.1-P	Field mustard	cytosol, peroxisome, plasma membrane	34.48	27.56
Bra027757.1-P	Field mustard	cytosol, endoplasmic reticulum, peroxisome	33.5	27.2
Bra004291.1-P	Field mustard	plasma membrane	28.08	27.01
Bra037369.1-P	Field mustard	cytosol	32.02	26.75
Bra037594.1-P	Field mustard	plasma membrane	29.06	26.34
Bra019285.1-P	Field mustard	cytosol	33.0	25.0
Bra000739.1-P	Field mustard	cytosol	32.51	24.72
Bra013717.1-P	Field mustard	nucleus	33.0	24.28
Bra029827.1-P	Field mustard	plasma membrane	28.57	24.27
Bra010539.1-P	Field mustard	cytosol	32.02	24.16
Bra039207.1-P	Field mustard	plasma membrane	18.72	18.27
Bra035242.1-P	Field mustard	cytosol	17.73	18.0
Bra033951.1-P	Field mustard	plasma membrane	25.62	17.22

Protein Annotations

MapMan:13.7.2.1	EnsemblPlantsGene:Bra003171	EnsemblPlants:Bra003171.1	EnsemblPlants:Bra003171.1-P	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005783	GO:GO:0005789	GO:GO:0016020	GO:GO:0016021
InterPro:IPR003388	UniProt:M4CG38	PFAM:PF02453	PFscan:PS50845	PANTHER:PTHR10994	PANTHER:PTHR10994:SF65
InterPro:Reticulon	TMHMM:TMhelix	UniParc:UPI00025413D0	SEG:seg	:	:

Description

AT3G54120 (E=2e-066) | reticulon family protein (RTNLB12)

Coordinates

chrA07:-:11675934..11676812

Molecular Weight (calculated)

23113.7 Da

IEP (calculated)

8.446

GRAVY (calculated)

0.464

Length

203 amino acids

Sequence
(BLAST)

001: MGSCSDKLFK RERTVHEILG GGIIADVILW RNKNVSVGIV TVTISSWMVF ESFAYTILTL LSSVLLLLLS ILFLWSKSAS ILNRPSPPLP EFQISEEMAE
101: VASKLLRFHV NKLLQVTYDV AMGRDTELFI KVAVYLFLIS LVGSLMDFQT LCHTGVLVVM TVPAFYERYE DCIDGTLAFI YNKAKELYHR FEIRSYLIKK
201: KLS

Best Arabidopsis Sequence Match ( AT3G54120.1 )
(BLAST)

001: MSSSSDKLFN RDRTIHEILG GGIVADVMLW RKKNVSVGIV TVTIASWMVF EAFAYTIFTL ISSVLLLLLS ILFLWSKSAS ILNRPSPPLP EFQISEAMAE
101: EASIWLRIHV NKLLQVSHDI AMARDSELYT KVAVSLFLLS LIGSLMDFQT LCHTSVLVVM TVPAFYERYE DYIVGSIEFI CNKTRELYLR LEIWANPENK
201: KLS

Arabidopsis Description

RTNLB12Reticulon-like protein B12 [Source:UniProtKB/Swiss-Prot;Acc:Q9M392]
SUBAcon: [cytosol,plasma membrane,vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.