Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane, vacuole, cytosol
Predictor Summary:
Predictor Summary:
- plastid 1
- cytosol 1
- extracellular 1
- endoplasmic reticulum 1
- vacuole 2
- plasma membrane 2
- golgi 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX73507 | Canola | cytosol, golgi, plasma membrane | 80.3 | 79.51 |
| CDX78209 | Canola | golgi, plasma membrane, vacuole | 79.8 | 79.02 |
| Bra007047.1-P | Field mustard | golgi, plasma membrane, vacuole | 79.8 | 79.02 |
| CDY51584 | Canola | plasma membrane | 78.82 | 78.82 |
| CDX67589 | Canola | golgi, plasma membrane, vacuole | 78.82 | 78.82 |
| Bra003171.1-P | Field mustard | plasma membrane | 78.33 | 78.33 |
| KRH75801 | Soybean | plasma membrane | 56.16 | 54.55 |
| KRH66004 | Soybean | endoplasmic reticulum, golgi, plasma membrane | 56.16 | 54.55 |
| VIT_08s0007g01720.t01 | Wine grape | plasma membrane | 55.17 | 53.59 |
| PGSC0003DMT400052428 | Potato | cytosol, plasma membrane, vacuole | 52.71 | 51.2 |
| Solyc09g013110.2.1 | Tomato | cytosol, plasma membrane, vacuole | 51.72 | 50.24 |
| GSMUA_Achr10P... | Banana | plasma membrane | 45.32 | 40.0 |
| EES03891 | Sorghum | golgi, peroxisome, plasma membrane | 39.41 | 37.74 |
| Zm00001d042846_P001 | Maize | plasma membrane | 38.42 | 37.14 |
| Os04t0367400-02 | Rice | plasma membrane | 38.92 | 37.09 |
| GSMUA_Achr8P02250_001 | Banana | cytosol, mitochondrion, peroxisome, plasma membrane | 44.34 | 36.44 |
| OQU78555 | Sorghum | extracellular | 36.95 | 33.94 |
| GSMUA_Achr6P33560_001 | Banana | plasma membrane | 42.86 | 32.95 |
| Os01t0851300-01 | Rice | golgi, plasma membrane, vacuole | 32.51 | 32.51 |
| Zm00001d039213_P001 | Maize | golgi, plasma membrane, plastid | 33.5 | 29.06 |
| AT3G19460.3 | Thale cress | plasma membrane | 33.0 | 28.63 |
| AT2G15280.1 | Thale cress | plasma membrane | 27.09 | 27.36 |
| AT3G18260.1 | Thale cress | plasma membrane | 30.05 | 27.11 |
| AT5G41600.1 | Thale cress | cytosol, nucleus, plasma membrane | 33.0 | 26.07 |
| AT3G61560.1 | Thale cress | cytosol, nucleus, plasma membrane | 30.54 | 24.51 |
| AT1G64090.2 | Thale cress | cytosol, endoplasmic reticulum, nucleus | 32.51 | 24.35 |
| AT2G46170.1 | Thale cress | cytosol, nucleus, plasma membrane | 30.54 | 24.31 |
| AT3G10915.7 | Thale cress | plasma membrane | 30.05 | 24.3 |
| AT4G01230.2 | Thale cress | cytosol | 28.08 | 23.36 |
| AT4G23630.2 | Thale cress | nucleus | 31.53 | 23.27 |
| AT1G68230.2 | Thale cress | plasma membrane | 24.63 | 23.26 |
| AT4G11220.1 | Thale cress | nucleus | 31.03 | 23.25 |
| AT3G10260.3 | Thale cress | plasma membrane | 28.57 | 21.72 |
| AT2G23640.1 | Thale cress | cytosol, peroxisome, plasma membrane | 21.18 | 20.87 |
Protein Annotations
| MapMan:13.7.2.1 | EntrezGene:824579 | ProteinID:AEE79190.1 | EMBL:AK229371 | ArrayExpress:AT3G54120 | EnsemblPlantsGene:AT3G54120 |
| RefSeq:AT3G54120 | TAIR:AT3G54120 | RefSeq:AT3G54120-TAIR-G | EnsemblPlants:AT3G54120.1 | TAIR:AT3G54120.1 | Unigene:At.68442 |
| EMBL:BT010698 | EMBL:BT010978 | ProteinID:CAB70986.1 | GO:GO:0003674 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005783 | GO:GO:0005789 | GO:GO:0016020 | GO:GO:0016021 |
| InterPro:IPR003388 | RefSeq:NP_190980.1 | PFAM:PF02453 | PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000230 |
| PO:PO:0000293 | PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001185 | PO:PO:0007064 | PO:PO:0007095 |
| PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 |
| PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 |
| PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 |
| PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 |
| PO:PO:0025281 | PFscan:PS50845 | PANTHER:PTHR10994 | PANTHER:PTHR10994:SF65 | UniProt:Q9M392 | InterPro:Reticulon |
| TMHMM:TMhelix | UniParc:UPI000009F4E5 | SEG:seg | : | : | : |
Description
RTNLB12Reticulon-like protein B12 [Source:UniProtKB/Swiss-Prot;Acc:Q9M392]
Coordinates
chr3:-:20041126..20042340
Molecular Weight (calculated)
23054.4 Da
IEP (calculated)
6.516
GRAVY (calculated)
0.421
Length
203 amino acids
Sequence
(BLAST)
(BLAST)
001: MSSSSDKLFN RDRTIHEILG GGIVADVMLW RKKNVSVGIV TVTIASWMVF EAFAYTIFTL ISSVLLLLLS ILFLWSKSAS ILNRPSPPLP EFQISEAMAE
101: EASIWLRIHV NKLLQVSHDI AMARDSELYT KVAVSLFLLS LIGSLMDFQT LCHTSVLVVM TVPAFYERYE DYIVGSIEFI CNKTRELYLR LEIWANPENK
201: KLS
101: EASIWLRIHV NKLLQVSHDI AMARDSELYT KVAVSLFLLS LIGSLMDFQT LCHTSVLVVM TVPAFYERYE DYIVGSIEFI CNKTRELYLR LEIWANPENK
201: KLS
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.