Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- plastid 1
- plasma membrane 5
- extracellular 2
- endoplasmic reticulum 2
- vacuole 2
- golgi 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra040612.1-P | Field mustard | plasma membrane | 72.64 | 79.78 |
| CDX71213 | Canola | plasma membrane | 78.11 | 77.34 |
| CDY48222 | Canola | cytosol, endoplasmic reticulum, plasma membrane | 77.11 | 76.35 |
| VIT_03s0180g00170.t01 | Wine grape | endoplasmic reticulum, plasma membrane, vacuole | 56.72 | 55.07 |
| KRG91024 | Soybean | plasma membrane | 51.24 | 50.49 |
| PGSC0003DMT400066222 | Potato | plasma membrane | 50.75 | 50.0 |
| KRH35738 | Soybean | endoplasmic reticulum | 49.75 | 49.02 |
| Solyc01g107620.2.1 | Tomato | plasma membrane | 50.75 | 46.58 |
| Zm00001d001901_P002 | Maize | plasma membrane | 43.28 | 43.94 |
| EES11624 | Sorghum | plasma membrane | 43.28 | 43.94 |
| TraesCS2A01G544000.1 | Wheat | plasma membrane | 43.28 | 43.72 |
| AT3G19460.3 | Thale cress | plasma membrane | 50.25 | 43.16 |
| Os04t0670000-01 | Rice | plasma membrane | 42.29 | 42.71 |
| Zm00001d026575_P001 | Maize | mitochondrion, peroxisome, plasma membrane, plastid, vacuole | 41.79 | 42.42 |
| TraesCS2B01G574200.2 | Wheat | plasma membrane | 41.29 | 41.71 |
| TraesCS2D01G545200.1 | Wheat | plasma membrane | 40.3 | 40.91 |
| GSMUA_Achr7P05440_001 | Banana | peroxisome, plasma membrane, vacuole | 44.28 | 39.91 |
| HORVU2Hr1G122310.2 | Barley | cytosol, plasma membrane | 30.85 | 33.33 |
| GSMUA_Achr4P20190_001 | Banana | cytosol, plastid | 45.27 | 32.27 |
| AT3G54120.1 | Thale cress | cytosol, plasma membrane, vacuole | 27.36 | 27.09 |
| AT1G68230.2 | Thale cress | plasma membrane | 28.86 | 26.98 |
| AT2G46170.1 | Thale cress | cytosol, nucleus, plasma membrane | 33.33 | 26.27 |
| AT3G61560.1 | Thale cress | cytosol, nucleus, plasma membrane | 31.34 | 24.9 |
| AT2G23640.1 | Thale cress | cytosol, peroxisome, plasma membrane | 25.37 | 24.76 |
| AT5G41600.1 | Thale cress | cytosol, nucleus, plasma membrane | 31.34 | 24.51 |
| AT1G64090.2 | Thale cress | cytosol, endoplasmic reticulum, nucleus | 32.84 | 24.35 |
| AT3G18260.1 | Thale cress | plasma membrane | 26.87 | 24.0 |
| AT3G10915.7 | Thale cress | plasma membrane | 29.85 | 23.9 |
| AT4G23630.2 | Thale cress | nucleus | 31.34 | 22.91 |
| AT4G11220.1 | Thale cress | nucleus | 29.35 | 21.77 |
| AT3G10260.3 | Thale cress | plasma membrane | 28.86 | 21.72 |
| AT4G01230.2 | Thale cress | cytosol | 25.87 | 21.31 |
Protein Annotations
| MapMan:13.7.2.1 | EntrezGene:816017 | ProteinID:AAD26905.1 | ProteinID:AEC06381.1 | ProteinID:AEC06382.1 | ArrayExpress:AT2G15280 |
| EnsemblPlantsGene:AT2G15280 | RefSeq:AT2G15280 | TAIR:AT2G15280 | RefSeq:AT2G15280-TAIR-G | EnsemblPlants:AT2G15280.1 | TAIR:AT2G15280.1 |
| EMBL:BT010716 | EMBL:BT010986 | EMBL:BX821446 | GO:GO:0003674 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005783 | GO:GO:0005789 | GO:GO:0016020 | GO:GO:0016021 |
| InterPro:IPR003388 | RefSeq:NP_179130.2 | RefSeq:NP_973467.1 | PFAM:PF02453 | PO:PO:0000013 | PO:PO:0000037 |
| PO:PO:0000084 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001016 | PO:PO:0001017 | PO:PO:0001054 |
| PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 |
| PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 |
| PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 |
| PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 |
| PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 |
| PO:PO:0025195 | PO:PO:0025281 | PFscan:PS50845 | PANTHER:PTHR10994 | PANTHER:PTHR10994:SF125 | UniProt:Q6NPD8 |
| InterPro:Reticulon | TMHMM:TMhelix | UniParc:UPI0000196B1A | SEG:seg | : | : |
Description
RTNLB10Reticulon-like protein B10 [Source:UniProtKB/Swiss-Prot;Acc:Q6NPD8]
Coordinates
chr2:+:6639973..6642353
Molecular Weight (calculated)
23484.3 Da
IEP (calculated)
10.255
GRAVY (calculated)
0.414
Length
201 amino acids
Sequence
(BLAST)
(BLAST)
001: MEESVHQSIR FGSVADLIMW KNRRGGFLLL GSTTLLWFLF EKCGYSFFPF VVNTQLLSVV ILFLWAKSAI LFNRPMPQLP NLEITEEFVF MVADAIRVWI
101: NTVLAVAREI YVGRNAKQLF RVSVVLWTVS FVGNFLNFLT ILYLGVVLSL LIPFLYERYQ DLIDEKLSLT HRVIQTQYRK IDERLLQKII AKPTNKIKKM
201: Q
101: NTVLAVAREI YVGRNAKQLF RVSVVLWTVS FVGNFLNFLT ILYLGVVLSL LIPFLYERYQ DLIDEKLSLT HRVIQTQYRK IDERLLQKII AKPTNKIKKM
201: Q
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.