Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- plastid 1
- mitochondrion 1
- cytosol 1
- plasma membrane 4
- extracellular 1
- golgi 1
- endoplasmic reticulum 1
- vacuole 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY36282 | Canola | plasma membrane | 72.91 | 82.06 |
| Bra034153.1-P | Field mustard | plasma membrane | 72.91 | 82.06 |
| CDY00975 | Canola | cytosol, endoplasmic reticulum, peroxisome | 75.3 | 79.08 |
| Bra029878.1-P | Field mustard | cytosol, peroxisome, plasma membrane | 75.3 | 79.08 |
| CDY08567 | Canola | cytosol | 74.5 | 77.59 |
| Solyc06g049060.2.1 | Tomato | mitochondrion, plasma membrane | 49.8 | 65.79 |
| KRG93546 | Soybean | plasma membrane | 47.41 | 59.8 |
| KRH18469 | Soybean | plasma membrane | 45.42 | 57.58 |
| PGSC0003DMT400042905 | Potato | cytosol, peroxisome, plasma membrane | 54.58 | 57.56 |
| GSMUA_Achr3P09820_001 | Banana | cytosol, peroxisome, plasma membrane | 49.4 | 53.91 |
| EER92307 | Sorghum | peroxisome | 47.81 | 52.63 |
| Os03t0336600-02 | Rice | plasma membrane | 47.81 | 51.95 |
| Zm00001d047517_P001 | Maize | peroxisome | 47.01 | 51.75 |
| TraesCS4D01G171300.2 | Wheat | peroxisome | 46.61 | 51.54 |
| TraesCS4A01G135900.1 | Wheat | peroxisome | 46.22 | 51.1 |
| TraesCS4B01G169100.2 | Wheat | cytosol, peroxisome, vacuole | 45.82 | 50.66 |
| HORVU4Hr1G050020.1 | Barley | plastid | 47.81 | 46.33 |
| AT3G54120.1 | Thale cress | cytosol, plasma membrane, vacuole | 24.3 | 30.05 |
| VIT_13s0067g02960.t01 | Wine grape | endoplasmic reticulum, peroxisome, plasma membrane | 39.04 | 29.97 |
| AT2G15280.1 | Thale cress | plasma membrane | 23.9 | 29.85 |
| AT3G18260.1 | Thale cress | plasma membrane | 26.29 | 29.33 |
| AT3G19460.3 | Thale cress | plasma membrane | 26.69 | 28.63 |
| AT5G41600.1 | Thale cress | cytosol, nucleus, plasma membrane | 28.29 | 27.63 |
| AT3G61560.1 | Thale cress | cytosol, nucleus, plasma membrane | 27.49 | 27.27 |
| AT1G64090.2 | Thale cress | cytosol, endoplasmic reticulum, nucleus | 27.89 | 25.83 |
| AT2G46170.1 | Thale cress | cytosol, nucleus, plasma membrane | 25.9 | 25.49 |
| AT1G68230.2 | Thale cress | plasma membrane | 21.51 | 25.12 |
| AT3G10260.3 | Thale cress | plasma membrane | 26.69 | 25.09 |
| AT4G23630.2 | Thale cress | nucleus | 26.29 | 24.0 |
| AT4G11220.1 | Thale cress | nucleus | 25.9 | 23.99 |
| AT4G01230.2 | Thale cress | cytosol | 22.71 | 23.36 |
| AT2G23640.1 | Thale cress | cytosol, peroxisome, plasma membrane | 17.53 | 21.36 |
Protein Annotations
| MapMan:13.7.2.1 | EntrezGene:820262 | UniProt:A0A1I9LP93 | ProteinID:ANM64401.1 | ArrayExpress:AT3G10915 | EnsemblPlantsGene:AT3G10915 |
| RefSeq:AT3G10915 | TAIR:AT3G10915 | RefSeq:AT3G10915-TAIR-G | EnsemblPlants:AT3G10915.7 | Unigene:At.44168 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005783 | GO:GO:0005789 | GO:GO:0016020 |
| GO:GO:0016021 | InterPro:IPR003388 | RefSeq:NP_001326431.1 | PFAM:PF02453 | PFscan:PS50845 | PANTHER:PTHR10994 |
| PANTHER:PTHR10994:SF67 | InterPro:Reticulon | TMHMM:TMhelix | UniParc:UPI000848DA38 | : | : |
Description
Reticulon-like protein [Source:UniProtKB/TrEMBL;Acc:A0A1I9LP93]
Coordinates
chr3:-:3415969..3417789
Molecular Weight (calculated)
28266.7 Da
IEP (calculated)
9.494
GRAVY (calculated)
0.339
Length
251 amino acids
Sequence
(BLAST)
(BLAST)
001: MHVKANSIWF LLDNPPNRCH SPINLAAFTN HCTEIVSLRN EGGSSSDYRL LGRQITVHQF MGGGKAADLL LWRRRHLSLG VIIISTVAWL IFEFSGLPFL
101: SVSSDVLLIV IMISFVHARV SAFRNRQLHS LPELVLSEEM VNSAAASFRI KLNHLLVMAH DVTVGNDFRL FFKVVICLWL LSAIGSYISL CTLLYIGTIL
201: SVTIPALYSK YQSKVDKCCG TIHRRLSHHY KIVDENVISR LSWSLSKDKD S
101: SVSSDVLLIV IMISFVHARV SAFRNRQLHS LPELVLSEEM VNSAAASFRI KLNHLLVMAH DVTVGNDFRL FFKVVICLWL LSAIGSYISL CTLLYIGTIL
201: SVTIPALYSK YQSKVDKCCG TIHRRLSHHY KIVDENVISR LSWSLSKDKD S
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.