Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum, cytosol, peroxisome
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 1
- extracellular 1
- endoplasmic reticulum 2
- vacuole 1
- plasma membrane 1
- golgi 1
- peroxisome 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY08567 | Canola | cytosol | 95.4 | 94.61 |
| CDY36282 | Canola | plasma membrane | 80.75 | 86.55 |
| AT3G10915.7 | Thale cress | plasma membrane | 79.08 | 75.3 |
| Solyc06g049060.2.1 | Tomato | mitochondrion, plasma membrane | 49.37 | 62.11 |
| KRG93546 | Soybean | plasma membrane | 48.95 | 58.79 |
| KRH18469 | Soybean | plasma membrane | 48.12 | 58.08 |
| PGSC0003DMT400042905 | Potato | cytosol, peroxisome, plasma membrane | 55.65 | 55.88 |
| GSMUA_Achr3P09820_001 | Banana | cytosol, peroxisome, plasma membrane | 51.05 | 53.04 |
| EER92307 | Sorghum | peroxisome | 49.37 | 51.75 |
| Zm00001d047517_P001 | Maize | peroxisome | 48.95 | 51.32 |
| Os03t0336600-02 | Rice | plasma membrane | 48.12 | 49.78 |
| TraesCS4D01G171300.2 | Wheat | peroxisome | 46.86 | 49.34 |
| TraesCS4A01G135900.1 | Wheat | peroxisome | 46.44 | 48.9 |
| TraesCS4B01G169100.2 | Wheat | cytosol, peroxisome, vacuole | 46.03 | 48.46 |
| HORVU4Hr1G050020.1 | Barley | plastid | 48.12 | 44.4 |
| CDY46172 | Canola | plastid | 29.71 | 35.15 |
| CDX67589 | Canola | golgi, plasma membrane, vacuole | 29.71 | 34.98 |
| CDX99221 | Canola | plasma membrane | 29.29 | 34.48 |
| CDY51584 | Canola | plasma membrane | 29.29 | 34.48 |
| CDX82294 | Canola | plastid | 28.03 | 34.18 |
| CDX78209 | Canola | golgi, plasma membrane, vacuole | 28.45 | 33.17 |
| CDY22971 | Canola | plasma membrane | 26.78 | 32.65 |
| CDY22970 | Canola | plasma membrane | 26.78 | 32.65 |
| CDX73507 | Canola | cytosol, golgi, plasma membrane | 27.62 | 32.2 |
| CDY48222 | Canola | cytosol, endoplasmic reticulum, plasma membrane | 26.36 | 31.03 |
| CDY38194 | Canola | cytosol, nucleus, plasma membrane | 31.8 | 30.4 |
| CDY08353 | Canola | cytosol, endoplasmic reticulum, nucleus | 31.8 | 30.4 |
| CDY51936 | Canola | endoplasmic reticulum, peroxisome, plasma membrane | 28.45 | 30.36 |
| CDY67571 | Canola | plasma membrane | 28.45 | 30.36 |
| CDY34396 | Canola | cytosol, endoplasmic reticulum, nucleus | 31.8 | 30.28 |
| CDX71213 | Canola | plasma membrane | 25.52 | 30.05 |
| CDX75962 | Canola | plasma membrane | 28.03 | 29.91 |
| CDY25557 | Canola | cytosol, endoplasmic reticulum, nucleus | 31.38 | 29.88 |
| CDX79993 | Canola | cytosol, peroxisome, plasma membrane | 31.38 | 29.88 |
| VIT_13s0067g02960.t01 | Wine grape | endoplasmic reticulum, peroxisome, plasma membrane | 40.59 | 29.66 |
| CDY42012 | Canola | cytosol, peroxisome, plasma membrane | 30.96 | 29.48 |
| CDY52012 | Canola | cytosol, peroxisome, plasma membrane | 30.96 | 29.13 |
| CDY53913 | Canola | cytosol, peroxisome, plasma membrane | 30.96 | 29.13 |
| CDY66516 | Canola | endoplasmic reticulum, extracellular | 22.59 | 29.03 |
| CDY62522 | Canola | cytosol | 9.62 | 28.75 |
| CDY00916 | Canola | plasma membrane | 28.03 | 28.03 |
| CDY08616 | Canola | plasma membrane | 27.62 | 27.62 |
| CDY10954 | Canola | cytosol | 30.54 | 27.04 |
| CDX96038 | Canola | plasma membrane | 23.85 | 27.01 |
| CDX90792 | Canola | cytosol, peroxisome, plasma membrane | 30.13 | 26.97 |
| CDX81500 | Canola | plasma membrane | 23.43 | 26.92 |
| CDY01898 | Canola | plasma membrane | 23.85 | 26.89 |
| CDY44123 | Canola | cytosol, nucleus, plasma membrane | 30.54 | 26.45 |
| CDY07184 | Canola | cytosol, peroxisome, plasma membrane | 26.78 | 26.34 |
| CDY57657 | Canola | cytosol, nucleus, plasma membrane | 30.13 | 26.18 |
| CDY13240 | Canola | cytosol, peroxisome, plasma membrane | 17.57 | 26.09 |
| CDY24806 | Canola | cytosol | 29.71 | 25.91 |
| CDY41666 | Canola | cytosol | 29.71 | 25.72 |
| CDY48510 | Canola | cytosol | 25.94 | 25.51 |
| CDX76854 | Canola | plasma membrane | 19.67 | 22.71 |
| CDY05135 | Canola | mitochondrion | 29.71 | 22.68 |
| CDY46067 | Canola | plasma membrane | 18.83 | 21.63 |
| CDX86802 | Canola | cytosol, nucleus, peroxisome | 20.5 | 20.0 |
| CDX89122 | Canola | extracellular, mitochondrion | 12.55 | 19.61 |
| CDY12701 | Canola | plasma membrane | 23.85 | 18.87 |
| CDY56712 | Canola | mitochondrion | 28.03 | 18.87 |
| CDX82165 | Canola | endoplasmic reticulum, peroxisome, plasma membrane, plastid | 19.25 | 18.55 |
Protein Annotations
| EnsemblPlants:CDY00975 | EnsemblPlantsGene:GSBRNA2T00110988001 | InterPro:IPR003388 | InterPro:Reticulon | PANTHER:PTHR10994 | PANTHER:PTHR10994:SF67 |
| PFAM:PF02453 | PFscan:PS50845 | ProteinID:CDY00975 | ProteinID:CDY00975.1 | SEG:seg | TMHMM:TMhelix |
| UniParc:UPI0004EE2B8F | MapMan:13.7.2.1 | : | : | : | : |
Description
BnaC05g42250D
Coordinates
chrLK031923:-:388019..389554
Molecular Weight (calculated)
26550.2 Da
IEP (calculated)
7.581
GRAVY (calculated)
0.197
Length
239 amino acids
Sequence
(BLAST)
(BLAST)
001: MRVLDFPMDS SSDIEGDSEG RNEGGGSTSD YRLLGRQVTV HQFMGGGKGE SFLSADLLLW RRRNHSLGVL VLSTAAWLTF ELSGLPILSV SSDVLLIGII
101: ISFVHAQVSS FRNRQADSLP ELVLSEEMVN STAASFRVKL NHLLVMAHDV TVGNDFRLFF KVVICLWLLS AIGSYISFCT LVYIGTILSV TIPALYSKYQ
201: RKVDKCCGLI HRQLSHQYKL VDENVISKLS WSLSKDKDS
101: ISFVHAQVSS FRNRQADSLP ELVLSEEMVN STAASFRVKL NHLLVMAHDV TVGNDFRLFF KVVICLWLLS AIGSYISFCT LVYIGTILSV TIPALYSKYQ
201: RKVDKCCGLI HRQLSHQYKL VDENVISKLS WSLSKDKDS
001: MDSLSDIDGD FDGRNEGGSS SDYRLLGRQI TVHQFMGGGK AADLLLWRRR HLSLGVIIIS TVAWLIFEFS GLPFLSVSSD VLLIVIMISF VHARVSAFRN
101: RQLHSLPELV LSEEMVNSAA ASFRIKLNHL LVMAHDVTVG NDFRLFFKVV ICLWLLSAIG SYISLCTLLY IGTILSVTIP ALYSKYQSKV DKCCGTIHRR
201: LSHHYKIVDE NVISRLSWSL SKDKDS
101: RQLHSLPELV LSEEMVNSAA ASFRIKLNHL LVMAHDVTVG NDFRLFFKVV ICLWLLSAIG SYISLCTLLY IGTILSVTIP ALYSKYQSKV DKCCGTIHRR
201: LSHHYKIVDE NVISRLSWSL SKDKDS
Arabidopsis Description
Reticulon-like protein [Source:UniProtKB/TrEMBL;Acc:A0A1I9LP93]
SUBAcon: [peroxisome,cytosol,plasma membrane]
SUBAcon: [peroxisome,cytosol,plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.