Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr3P15760_001 | Banana | cytosol | 45.0 | 24.0 |
| CDY10954 | Canola | cytosol | 62.5 | 18.52 |
| Bra019285.1-P | Field mustard | cytosol | 61.25 | 18.28 |
| CDY44123 | Canola | cytosol, nucleus, plasma membrane | 62.5 | 18.12 |
| CDY41666 | Canola | cytosol | 61.25 | 17.75 |
| GSMUA_Achr8P27830_001 | Banana | cytosol, peroxisome, plasma membrane | 55.0 | 17.53 |
| GSMUA_Achr9P05440_001 | Banana | nucleus, peroxisome, plasma membrane | 55.0 | 17.53 |
| GSMUA_Achr3P31920_001 | Banana | cytosol | 47.5 | 17.35 |
| CDY24806 | Canola | cytosol | 58.75 | 17.15 |
| AT4G23630.2 | Thale cress | nucleus | 58.75 | 17.09 |
| CDY57657 | Canola | cytosol, nucleus, plasma membrane | 58.75 | 17.09 |
| CDX90792 | Canola | cytosol, peroxisome, plasma membrane | 56.25 | 16.85 |
| GSMUA_Achr6P31860_001 | Banana | cytosol, nucleus, plasma membrane | 52.5 | 16.67 |
| GSMUA_AchrUn_... | Banana | cytosol, nucleus, plasma membrane | 52.5 | 16.28 |
| KXG33320 | Sorghum | cytosol, nucleus, plasma membrane | 52.5 | 16.28 |
| Os01t0736900-01 | Rice | plasma membrane | 51.25 | 16.21 |
| TraesCS3A01G278800.1 | Wheat | golgi | 50.0 | 16.13 |
| TraesCS3D01G279100.1 | Wheat | cytosol, nucleus, plasma membrane | 50.0 | 16.13 |
| TraesCS3B01G313000.1 | Wheat | cytosol, nucleus, plasma membrane | 50.0 | 15.81 |
| Zm00001d012776_P001 | Maize | extracellular | 50.0 | 15.81 |
| HORVU3Hr1G069970.2 | Barley | cytosol, nucleus, plasma membrane | 50.0 | 15.69 |
| TraesCS1A01G346800.3 | Wheat | plasma membrane | 48.75 | 15.48 |
| VIT_02s0025g00640.t01 | Wine grape | cytosol, nucleus, plasma membrane | 48.75 | 15.48 |
| TraesCS1B01G360800.1 | Wheat | cytosol, nucleus, plasma membrane | 47.5 | 15.26 |
| CDY08353 | Canola | cytosol, endoplasmic reticulum, nucleus | 47.5 | 15.2 |
| Zm00001d043551_P003 | Maize | plasma membrane | 48.75 | 15.18 |
| CDX79993 | Canola | cytosol, peroxisome, plasma membrane | 47.5 | 15.14 |
| CDY25557 | Canola | cytosol, endoplasmic reticulum, nucleus | 47.5 | 15.14 |
| CDY42012 | Canola | cytosol, peroxisome, plasma membrane | 47.5 | 15.14 |
| GSMUA_Achr4P08400_001 | Banana | cytosol | 47.5 | 15.02 |
| TraesCS1D01G349700.1 | Wheat | cytosol, nucleus, plasma membrane | 46.25 | 14.92 |
| EES19841 | Sorghum | cytosol, nucleus, plasma membrane | 47.5 | 14.9 |
| CDY38194 | Canola | cytosol, nucleus, plasma membrane | 46.25 | 14.8 |
| CDY34396 | Canola | cytosol, endoplasmic reticulum, nucleus | 46.25 | 14.74 |
| KRH41254 | Soybean | cytosol, nucleus, plasma membrane | 46.25 | 14.57 |
| Zm00001d038768_P001 | Maize | extracellular, mitochondrion | 46.25 | 14.57 |
| VIT_15s0046g01760.t01 | Wine grape | cytosol, peroxisome, plasma membrane | 46.25 | 14.51 |
| CDY05135 | Canola | mitochondrion | 56.25 | 14.38 |
| HORVU1Hr1G082010.3 | Barley | cytosol, nucleus, plasma membrane, plastid | 46.25 | 14.18 |
| CDY52012 | Canola | cytosol, peroxisome, plasma membrane | 45.0 | 14.17 |
| CDY53913 | Canola | cytosol, peroxisome, plasma membrane | 45.0 | 14.17 |
| KRH59988 | Soybean | mitochondrion | 45.0 | 14.17 |
| PGSC0003DMT400032086 | Potato | cytosol, nucleus, plasma membrane | 47.5 | 14.07 |
| Solyc08g081730.2.1 | Tomato | endoplasmic reticulum, plastid | 47.5 | 14.07 |
| Os05t0526400-01 | Rice | plasma membrane | 43.75 | 13.94 |
| GSMUA_Achr10P... | Banana | cytosol, endoplasmic reticulum, plasma membrane | 41.25 | 13.1 |
| CDX86802 | Canola | cytosol, nucleus, peroxisome | 38.75 | 12.65 |
| TraesCS3B01G178100.1 | Wheat | cytosol, nucleus, plasma membrane | 45.0 | 12.59 |
| TraesCS3D01G159100.1 | Wheat | cytosol, nucleus, plasma membrane | 45.0 | 12.59 |
| CDY13240 | Canola | cytosol, peroxisome, plasma membrane | 25.0 | 12.42 |
| GSMUA_Achr5P06850_001 | Banana | cytosol, nucleus, plasma membrane | 38.75 | 12.4 |
| CDY00916 | Canola | plasma membrane | 36.25 | 12.13 |
| CDY08616 | Canola | plasma membrane | 36.25 | 12.13 |
| HORVU7Hr1G081290.4 | Barley | plastid | 35.0 | 12.12 |
| OQU84758 | Sorghum | cytosol, peroxisome, plasma membrane | 35.0 | 12.07 |
| Zm00001d008982_P001 | Maize | cytosol, nucleus, plasma membrane | 41.25 | 11.83 |
| HORVU3Hr1G030760.2 | Barley | mitochondrion | 46.25 | 11.78 |
| Os02t0265900-01 | Rice | cytosol, peroxisome, plasma membrane | 33.75 | 11.74 |
| Zm00001d016041_P001 | Maize | extracellular | 33.75 | 11.74 |
| KXG31516 | Sorghum | cytosol, nucleus, plasma membrane | 41.25 | 11.62 |
| Zm00001d039316_P001 | Maize | cytosol, nucleus, plasma membrane | 42.5 | 11.11 |
| TraesCS3A01G151200.1 | Wheat | cytosol, peroxisome, plasma membrane | 43.75 | 10.87 |
| Zm00001d037453_P001 | Maize | cytosol, peroxisome, plasma membrane | 35.0 | 10.73 |
| Os06t0503400-01 | Rice | plasma membrane | 35.0 | 10.57 |
| EER89811 | Sorghum | peroxisome | 33.75 | 10.55 |
| TraesCS7A01G341800.1 | Wheat | cytosol, peroxisome, plasma membrane, plastid | 33.75 | 10.38 |
| TraesCS7B01G241100.1 | Wheat | cytosol, peroxisome, plasma membrane, plastid | 33.75 | 10.38 |
| TraesCS7D01G337800.1 | Wheat | cytosol, peroxisome, plasma membrane, plastid | 33.75 | 10.38 |
| CDY46172 | Canola | plastid | 25.0 | 9.9 |
| CDX67589 | Canola | golgi, plasma membrane, vacuole | 25.0 | 9.85 |
| CDX99221 | Canola | plasma membrane | 25.0 | 9.85 |
| CDY51584 | Canola | plasma membrane | 25.0 | 9.85 |
| CDY67571 | Canola | plasma membrane | 27.5 | 9.82 |
| CDX78209 | Canola | golgi, plasma membrane, vacuole | 25.0 | 9.76 |
| CDY00975 | Canola | cytosol, endoplasmic reticulum, peroxisome | 28.75 | 9.62 |
| CDX81500 | Canola | plasma membrane | 25.0 | 9.62 |
| CDX96038 | Canola | plasma membrane | 25.0 | 9.48 |
| CDY01898 | Canola | plasma membrane | 25.0 | 9.43 |
| HORVU7Hr1G075700.2 | Barley | mitochondrion | 35.0 | 9.33 |
| CDX73507 | Canola | cytosol, golgi, plasma membrane | 23.75 | 9.27 |
| CDX82294 | Canola | plastid | 22.5 | 9.18 |
| CDY22970 | Canola | plasma membrane | 22.5 | 9.18 |
| CDY22971 | Canola | plasma membrane | 22.5 | 9.18 |
| CDY08567 | Canola | cytosol | 27.5 | 9.13 |
| CDY07184 | Canola | cytosol, peroxisome, plasma membrane | 27.5 | 9.05 |
| CDY48510 | Canola | cytosol | 27.5 | 9.05 |
| Os01t0226300-01 | Rice | plasma membrane | 20.0 | 8.99 |
| CDY36282 | Canola | plasma membrane | 25.0 | 8.97 |
| CDX75962 | Canola | plasma membrane | 25.0 | 8.93 |
| CDY51936 | Canola | endoplasmic reticulum, peroxisome, plasma membrane | 25.0 | 8.93 |
| CDY56712 | Canola | mitochondrion | 37.5 | 8.45 |
| CDX71213 | Canola | plasma membrane | 21.25 | 8.37 |
| CDY48222 | Canola | cytosol, endoplasmic reticulum, plasma membrane | 21.25 | 8.37 |
| CDY66516 | Canola | endoplasmic reticulum, extracellular | 16.25 | 6.99 |
| CDX76854 | Canola | plasma membrane | 17.5 | 6.76 |
| CDY46067 | Canola | plasma membrane | 17.5 | 6.73 |
| CDY12701 | Canola | plasma membrane | 25.0 | 6.62 |
| CDX89122 | Canola | extracellular, mitochondrion | 8.75 | 4.58 |
| CDX82165 | Canola | endoplasmic reticulum, peroxisome, plasma membrane, plastid | 11.25 | 3.63 |
| VIT_07s0031g02730.t01 | Wine grape | golgi, mitochondrion, nucleus, plasma membrane | 6.25 | 2.78 |
| Zm00001d020729_P001 | Maize | plasma membrane | 2.5 | 2.11 |
| Zm00001d020229_P001 | Maize | plasma membrane | 2.5 | 1.32 |
Protein Annotations
| EnsemblPlants:CDY62522 | EnsemblPlantsGene:GSBRNA2T00036360001 | GO:A0A078JAL0 | GO:GO:0005575 | GO:GO:0016020 | GO:GO:0016021 |
| InterPro:IPR003388 | InterPro:Reticulon | PANTHER:PTHR10994 | PANTHER:PTHR10994:SF70 | PFAM:PF02453 | PFscan:PS50845 |
| ProteinID:CDY62522 | ProteinID:CDY62522.1 | SEG:seg | TMHMM:TMhelix | UniParc:UPI0004EEF123 | UniProt:A0A078JAL0 |
| MapMan:13.7.2.1 | : | : | : | : | : |
Description
BnaC04g56290DReticulon-like protein [Source:UniProtKB/TrEMBL;Acc:A0A078JAL0]
Coordinates
chrLK034156:+:15306..15738
Molecular Weight (calculated)
8868.7 Da
IEP (calculated)
9.840
GRAVY (calculated)
-0.415
Length
80 amino acids
Sequence
(BLAST)
(BLAST)
1: MVVSDDDKNK KSSNSPSAVE SKAYGLFGRE KHVHKVLGRG KHIEPATDIF MWKNKKMSGG VLGGATAAWV LLELMEYYLN
001: MAEEIEKSVP TEESLMEKIS EKIHHHDSSS SSESEYEKPD SPSAVKAKIY RMFGREKPVH KVLGGGKPAD VFLWRDKKLS GAVLGVATAI WVLFELVEYH
101: LLSLLCHISI LALGGLFLWS NAHTLINKTS PQIPEIHVPE EAFLVVASSL RNELNQAFVI LRSIALGRDL KKFLMVCSFF VADVCCV
101: LLSLLCHISI LALGGLFLWS NAHTLINKTS PQIPEIHVPE EAFLVVASSL RNELNQAFVI LRSIALGRDL KKFLMVCSFF VADVCCV
Arabidopsis Description
RTNLB5Reticulon-like protein B5 [Source:UniProtKB/Swiss-Prot;Acc:O82352]
SUBAcon: [plasma membrane,nucleus,cytosol]
SUBAcon: [plasma membrane,nucleus,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.