Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS3B01G178100.1 | Wheat | cytosol, nucleus, plasma membrane | 88.85 | 97.55 |
| TraesCS3D01G159100.1 | Wheat | cytosol, nucleus, plasma membrane | 88.85 | 97.55 |
| Os01t0226300-01 | Rice | plasma membrane | 51.27 | 90.45 |
| TraesCS3A01G151200.1 | Wheat | cytosol, peroxisome, plasma membrane | 88.85 | 86.65 |
| KXG31516 | Sorghum | cytosol, nucleus, plasma membrane | 73.89 | 81.69 |
| Zm00001d008982_P001 | Maize | cytosol, nucleus, plasma membrane | 72.29 | 81.36 |
| Zm00001d039316_P001 | Maize | cytosol, nucleus, plasma membrane | 72.29 | 74.18 |
| VIT_15s0046g01760.t01 | Wine grape | cytosol, peroxisome, plasma membrane | 56.37 | 69.41 |
| KRH41254 | Soybean | cytosol, nucleus, plasma membrane | 55.41 | 68.5 |
| KRH59988 | Soybean | mitochondrion | 55.41 | 68.5 |
| HORVU3Hr1G069970.2 | Barley | cytosol, nucleus, plasma membrane | 54.46 | 67.06 |
| VIT_02s0025g00640.t01 | Wine grape | cytosol, nucleus, plasma membrane | 52.23 | 65.08 |
| Solyc01g095200.2.1 | Tomato | plastid | 54.14 | 64.64 |
| PGSC0003DMT400000230 | Potato | cytosol, nucleus, plasma membrane | 54.46 | 64.53 |
| PGSC0003DMT400049928 | Potato | cytosol, nucleus, plasma membrane | 51.59 | 63.53 |
| Solyc03g007740.2.1 | Tomato | nucleus | 50.96 | 62.75 |
| PGSC0003DMT400051387 | Potato | cytosol, nucleus, plasma membrane | 50.96 | 62.75 |
| KRH40357 | Soybean | endoplasmic reticulum | 51.27 | 62.65 |
| Solyc10g011870.2.1 | Tomato | cytosol, nucleus, plasma membrane | 52.23 | 62.36 |
| CDY34396 | Canola | cytosol, endoplasmic reticulum, nucleus | 49.68 | 62.15 |
| CDY25557 | Canola | cytosol, endoplasmic reticulum, nucleus | 49.68 | 62.15 |
| CDY08353 | Canola | cytosol, endoplasmic reticulum, nucleus | 49.36 | 62.0 |
| PGSC0003DMT400032086 | Potato | cytosol, nucleus, plasma membrane | 53.18 | 61.85 |
| CDY38194 | Canola | cytosol, nucleus, plasma membrane | 49.04 | 61.6 |
| Solyc08g081730.2.1 | Tomato | endoplasmic reticulum, plastid | 52.87 | 61.48 |
| Bra027678.1-P | Field mustard | cytosol, endoplasmic reticulum, nucleus | 49.04 | 61.35 |
| KRH00872 | Soybean | endoplasmic reticulum | 50.32 | 61.0 |
| Bra027757.1-P | Field mustard | cytosol, endoplasmic reticulum, peroxisome | 48.41 | 60.8 |
| AT5G41600.1 | Thale cress | cytosol, nucleus, plasma membrane | 49.68 | 60.7 |
| KRH06560 | Soybean | endoplasmic reticulum | 49.36 | 60.55 |
| PGSC0003DMT400074360 | Potato | cytosol, nucleus, plasma membrane | 48.73 | 60.47 |
| Solyc06g036430.2.1 | Tomato | cytosol, nucleus, plasma membrane | 48.41 | 60.08 |
| CDY52012 | Canola | cytosol, peroxisome, plasma membrane | 47.45 | 58.66 |
| Bra003455.1-P | Field mustard | cytosol, peroxisome, plasma membrane | 46.82 | 57.87 |
| CDY53913 | Canola | cytosol, peroxisome, plasma membrane | 46.82 | 57.87 |
| AT3G61560.1 | Thale cress | cytosol, nucleus, plasma membrane | 46.5 | 57.71 |
| AT4G23630.2 | Thale cress | nucleus | 50.0 | 57.09 |
| CDX79993 | Canola | cytosol, peroxisome, plasma membrane | 45.54 | 56.97 |
| Bra004562.1-P | Field mustard | cytosol, peroxisome, plasma membrane | 45.54 | 56.97 |
| CDX90792 | Canola | cytosol, peroxisome, plasma membrane | 48.41 | 56.93 |
| AT1G64090.2 | Thale cress | cytosol, endoplasmic reticulum, nucleus | 49.04 | 56.83 |
| Bra019285.1-P | Field mustard | cytosol | 48.41 | 56.72 |
| CDY10954 | Canola | cytosol | 48.73 | 56.67 |
| Bra000739.1-P | Field mustard | cytosol | 48.09 | 56.55 |
| CDY42012 | Canola | cytosol, peroxisome, plasma membrane | 44.9 | 56.18 |
| VIT_16s0050g01790.t01 | Wine grape | cytosol, nucleus, plasma membrane | 45.22 | 55.91 |
| CDY13240 | Canola | cytosol, peroxisome, plasma membrane | 28.66 | 55.9 |
| CDY24806 | Canola | cytosol | 48.73 | 55.84 |
| AT4G11220.1 | Thale cress | nucleus | 48.09 | 55.72 |
| AT2G46170.1 | Thale cress | cytosol, nucleus, plasma membrane | 45.22 | 55.69 |
| Bra010539.1-P | Field mustard | cytosol | 47.45 | 55.39 |
| CDY57657 | Canola | cytosol, nucleus, plasma membrane | 48.09 | 54.91 |
| KRH35223 | Soybean | cytosol, nucleus, plasma membrane | 43.63 | 54.8 |
| Bra013717.1-P | Field mustard | nucleus | 48.09 | 54.71 |
| CDY41666 | Canola | cytosol | 48.09 | 54.71 |
| CDY44123 | Canola | cytosol, nucleus, plasma membrane | 48.09 | 54.71 |
| KRG99174 | Soybean | endoplasmic reticulum, plasma membrane | 14.97 | 54.02 |
| HORVU1Hr1G017470.2 | Barley | cytosol, endoplasmic reticulum, nucleus | 42.36 | 53.85 |
| KRH48008 | Soybean | cytosol, peroxisome, plasma membrane | 50.96 | 50.96 |
| VIT_02s0025g00590.t01 | Wine grape | mitochondrion | 9.55 | 50.0 |
| HORVU1Hr1G082010.3 | Barley | cytosol, nucleus, plasma membrane, plastid | 41.08 | 49.43 |
| AT4G01230.2 | Thale cress | cytosol | 36.62 | 47.13 |
| CDY05135 | Canola | mitochondrion | 46.5 | 46.65 |
| Bra037369.1-P | Field mustard | cytosol | 35.99 | 46.5 |
| CDY48510 | Canola | cytosol | 35.99 | 46.5 |
| CDY07184 | Canola | cytosol, peroxisome, plasma membrane | 35.99 | 46.5 |
| CDY62522 | Canola | cytosol | 11.78 | 46.25 |
| HORVU7Hr1G081290.4 | Barley | plastid | 31.53 | 42.86 |
| HORVU7Hr1G075700.2 | Barley | mitochondrion | 40.45 | 42.33 |
| HORVU5Hr1G101680.2 | Barley | cytosol, endoplasmic reticulum, peroxisome | 33.12 | 39.85 |
| KRG91601 | Soybean | mitochondrion | 42.99 | 39.71 |
| HORVU3Hr1G064240.2 | Barley | plasma membrane | 27.39 | 39.27 |
| Bra035242.1-P | Field mustard | cytosol | 24.2 | 38.0 |
| CDX86802 | Canola | cytosol, nucleus, peroxisome | 28.34 | 36.33 |
| VIT_07s0031g02730.t01 | Wine grape | golgi, mitochondrion, nucleus, plasma membrane | 18.79 | 32.78 |
| CDX89122 | Canola | extracellular, mitochondrion | 15.29 | 31.37 |
| HORVU1Hr1G083110.3 | Barley | plastid | 27.39 | 29.45 |
| HORVU4Hr1G050020.1 | Barley | plastid | 22.61 | 27.41 |
| HORVU2Hr1G060770.16 | Barley | plasma membrane | 32.8 | 26.89 |
| HORVU3Hr1G008400.1 | Barley | cytosol, peroxisome | 26.11 | 23.56 |
| HORVU2Hr1G122310.2 | Barley | cytosol, plasma membrane | 13.69 | 23.12 |
Protein Annotations
| EnsemblPlants:HORVU3Hr1G030760.2 | EnsemblPlantsGene:HORVU3Hr1G030760 | InterPro:IPR003388 | InterPro:Reticulon | PANTHER:PTHR10994 | PANTHER:PTHR10994:SF125 |
| PFAM:PF02453 | PFscan:PS50845 | SEG:seg | TMHMM:TMhelix | MapMan:13.7.2.1 | : |
Description
No Description!
Coordinates
chrchr3H:+:149813295..149816033
Molecular Weight (calculated)
34454.6 Da
IEP (calculated)
9.543
GRAVY (calculated)
-0.053
Length
314 amino acids
Sequence
(BLAST)
(BLAST)
001: PLHSHAHRHH PFSCGAARGF RGERKLAMAE QPHAEDAGHK PETLMEKIAD KLHVGGGGDH HSSSSDSDHD ERPRPSAPPA PAPAPAASEV TTASFASSAS
101: AAAADAKNRM FRLFGREQPI HKVLGGGKPA DVFMWRNKHI SAGVLGGATA IWILFELLGY HLLAFLGHAL IFSLGVLFLW SNASSFINKS PPRIPEVIIP
201: EDLVVNIALS TRHEINRAFA NLRQIALGRD IKKFLIVIAG LWLLSILGSC CNFLTLFYIV FVVLHTVPVI YEKYEDQIDT YGEKGWIEVK KQYAVFDAKV
301: LSKVPRGPLK DKKN
101: AAAADAKNRM FRLFGREQPI HKVLGGGKPA DVFMWRNKHI SAGVLGGATA IWILFELLGY HLLAFLGHAL IFSLGVLFLW SNASSFINKS PPRIPEVIIP
201: EDLVVNIALS TRHEINRAFA NLRQIALGRD IKKFLIVIAG LWLLSILGSC CNFLTLFYIV FVVLHTVPVI YEKYEDQIDT YGEKGWIEVK KQYAVFDAKV
301: LSKVPRGPLK DKKN
001: MAEEHKHDES VIAPEPAVEV VERESLMDKI SEKIHHGGDS SSSSSSSDDE DEKKKTKKPS SPSSSMKSKV YRLFGREQPV HKVLGGGKPA DIFMWKNKKM
101: SGGVLGGATA AWVVFELMEY HLLTLLCHVM IVVLAVLFLW SNATMFINKS PPKIPEVHIP EEPILQLASG LRIEINRGFS SLREIASGRD LKKFLIAIAG
201: LWVLSILGGC FNFLTLAYIA LVLLFTVPLA YDKYEDKVDP LGEKAMIELK KQYAVLDEKV LSKIPLGPLK NKKKD
101: SGGVLGGATA AWVVFELMEY HLLTLLCHVM IVVLAVLFLW SNATMFINKS PPKIPEVHIP EEPILQLASG LRIEINRGFS SLREIASGRD LKKFLIAIAG
201: LWVLSILGGC FNFLTLAYIA LVLLFTVPLA YDKYEDKVDP LGEKAMIELK KQYAVLDEKV LSKIPLGPLK NKKKD
Arabidopsis Description
RTNLB1Reticulon-like protein [Source:UniProtKB/TrEMBL;Acc:A0A178V247]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.