Skip to main content
crop-pal logo
Barley
Search for another protein from :
Barley
Subcellular Localization
min:
: max

 
Winner_takes_all: plasma membrane, nucleus, cytosol

Predictor Summary:
  • nucleus 2
  • cytosol 1
  • plasma membrane 3
  • plastid 1
  • extracellular 1
  • endoplasmic reticulum 1
  • vacuole 1
  • golgi 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol, nucleus, plasma membrane
Any Predictor:cytosol, nucleus, plastid, secretory
BaCelLo:nucleus
MultiLoc:cytosol
Plant-mPloc:plasma membrane, plastid
PProwler:secretory
WoLF PSORT:plasma membrane
YLoc:nucleus
PPI

Inferred distinct locusB in Crop

locusBlocations
HORVU0Hr1G002680.2
HORVU1Hr1G023500.9
HORVU1Hr1G028520.1
HORVU1Hr1G028870.1
HORVU1Hr1G047990.4
HORVU1Hr1G069080.4
HORVU1Hr1G072070.1
HORVU1Hr1G082010.3
HORVU1Hr1G093680.1
HORVU1Hr1G093720.5
HORVU1Hr1G095120.1
HORVU2Hr1G005680.1
HORVU2Hr1G006030.4
HORVU2Hr1G063710.1
HORVU2Hr1G063720.1
HORVU2Hr1G067170.1
HORVU2Hr1G078290.3
HORVU2Hr1G093180.1
HORVU3Hr1G018940.2
HORVU3Hr1G030760.2
HORVU3Hr1G044700.1
HORVU3Hr1G052820.4
HORVU3Hr1G069970.2
HORVU3Hr1G077280.2
HORVU3Hr1G077290.1
HORVU3Hr1G086830.7
HORVU3Hr1G094550.2
HORVU3Hr1G108010.6
HORVU4Hr1G007060.2
HORVU4Hr1G058460.1
HORVU5Hr1G029200.4
HORVU5Hr1G112790.2
HORVU6Hr1G009670.1
HORVU6Hr1G034030.2
HORVU6Hr1G054760.4
HORVU7Hr1G075380.6
HORVU7Hr1G075700.2
HORVU7Hr1G081290.4
HORVU7Hr1G094010.8
HORVU7Hr1G094050.2

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT4G11220.1 HORVU1Hr1G023500.9 AT1G09330.1 21798944
AT4G11220.1 HORVU1Hr1G028870.1 AT3G59500.1 21798944
AT4G11220.1 HORVU6Hr1G034030.2 AT3G59500.1 21798944
AT4G11220.1 HORVU7Hr1G094010.8 AT3G59500.1 21798944
AT4G11220.1 HORVU7Hr1G094050.2 AT3G59500.1 21798944
AT5G41600.1 HORVU1Hr1G028520.1 AT1G55190.1 21798944
AT5G41600.1 HORVU3Hr1G018940.2 AT1G55190.1 21798944
AT5G41600.1 HORVU1Hr1G069080.4 AT1G77350.1 21798944
AT5G41600.1 HORVU3Hr1G108010.6 AT2G03120.1 21798944
AT5G41600.1 HORVU6Hr1G009670.1 AT2G03120.1 21798944
AT5G41600.1 HORVU2Hr1G078290.3 AT2G39960.1 21798944
AT5G41600.1 HORVU4Hr1G058460.1 AT2G39960.1 21798944
AT5G41600.1 HORVU2Hr1G005680.1 AT2G46890.1 21798944
AT5G41600.1 HORVU2Hr1G093180.1 AT2G46890.1 21798944
AT5G41600.1 HORVU1Hr1G093680.1 AT3G02420.1 21798944
AT5G41600.1 HORVU1Hr1G093720.5 AT3G02420.1 21798944
AT5G41600.1 HORVU1Hr1G095120.1 AT3G02420.1 21798944
AT5G41600.1 HORVU2Hr1G063710.1 AT3G02420.1 21798944
AT5G41600.1 HORVU2Hr1G063720.1 AT3G02420.1 21798944
AT5G41600.1 HORVU2Hr1G067170.1 AT3G02420.1 21798944
AT5G41600.1 HORVU3Hr1G044700.1 AT3G02420.1 21798944
AT5G41600.1 HORVU3Hr1G052820.4 AT3G02420.1 21798944
AT5G41600.1 HORVU3Hr1G077280.2 AT3G02420.1 21798944
AT5G41600.1 HORVU3Hr1G077290.1 AT3G02420.1 21798944
AT5G41600.1 HORVU4Hr1G007060.2 AT3G02420.1 21798944
AT5G41600.1 HORVU5Hr1G029200.4 AT3G02420.1 21798944
AT5G41600.1 HORVU6Hr1G054760.4 AT3G02420.1 21798944
AT5G41600.1 HORVU0Hr1G002680.2 AT3G07950.1 21798944
AT5G41600.1 HORVU2Hr1G006030.4 AT3G07950.1 21798944
AT5G41600.1 HORVU3Hr1G094550.2 AT3G27080.1 21798944
AT5G41600.1 HORVU7Hr1G075380.6 AT3G27080.1 21798944
AT5G41600.1 HORVU1Hr1G072070.1 AT3G46060.1 21798944
AT5G41600.1 HORVU3Hr1G086830.7 AT3G46060.1 21798944
AT5G41600.1 HORVU5Hr1G112790.2 AT3G46060.1 21798944
AT5G41600.1 HORVU1Hr1G028870.1 AT3G59500.1 21798944
AT5G41600.1 HORVU6Hr1G034030.2 AT3G59500.1 21798944
AT5G41600.1 HORVU7Hr1G094010.8 AT3G59500.1 21798944
AT5G41600.1 HORVU7Hr1G094050.2 AT3G59500.1 21798944
AT5G41600.1 HORVU1Hr1G082010.3 AT5G41600.1 21798944
AT5G41600.1 HORVU3Hr1G030760.2 AT5G41600.1 21798944
AT5G41600.1 HORVU3Hr1G069970.2 AT5G41600.1 21798944
AT5G41600.1 HORVU7Hr1G075700.2 AT5G41600.1 21798944
AT5G41600.1 HORVU7Hr1G081290.4 AT5G41600.1 21798944
AT5G41600.1 HORVU1Hr1G047990.4 AT5G53560.1 21798944
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
TraesCS3B01G313000.1 Wheat cytosol, nucleus, plasma membrane 96.08 96.84
TraesCS3D01G279100.1 Wheat cytosol, nucleus, plasma membrane 93.73 96.37
TraesCS3A01G278800.1 Wheat golgi 93.33 95.97
Os01t0736900-01 Rice plasma membrane 84.31 84.98
Zm00001d043551_P003 Maize plasma membrane 83.53 82.88
Zm00001d012776_P001 Maize extracellular 81.96 82.61
KXG33320 Sorghum cytosol, nucleus, plasma membrane 82.35 81.4
CDY08353 Canola cytosol, endoplasmic reticulum, nucleus 64.71 66.0
CDY25557 Canola cytosol, endoplasmic reticulum, nucleus 64.71 65.74
VIT_15s0046g01760.t01 Wine grape cytosol, peroxisome, plasma membrane 65.49 65.49
VIT_02s0025g00640.t01 Wine grape cytosol, nucleus, plasma membrane 64.71 65.48
CDY34396 Canola cytosol, endoplasmic reticulum, nucleus 63.53 64.54
CDY38194 Canola cytosol, nucleus, plasma membrane 63.14 64.4
Bra027678.1-P Field mustard cytosol, endoplasmic reticulum, nucleus 63.14 64.14
Solyc03g007740.2.1 Tomato nucleus 63.92 63.92
KRH41254 Soybean cytosol, nucleus, plasma membrane 63.53 63.78
Bra027757.1-P Field mustard cytosol, endoplasmic reticulum, peroxisome 62.35 63.6
PGSC0003DMT400051387 Potato cytosol, nucleus, plasma membrane 63.53 63.53
KRH59988 Soybean mitochondrion 63.14 63.39
AT5G41600.1 Thale cress cytosol, nucleus, plasma membrane 63.53 63.03
PGSC0003DMT400032086 Potato cytosol, nucleus, plasma membrane 66.27 62.59
PGSC0003DMT400074360 Potato cytosol, nucleus, plasma membrane 61.96 62.45
PGSC0003DMT400049928 Potato cytosol, nucleus, plasma membrane 62.35 62.35
PGSC0003DMT400000230 Potato cytosol, nucleus, plasma membrane 64.71 62.26
Solyc10g011870.2.1 Tomato cytosol, nucleus, plasma membrane 63.92 61.98
Solyc01g095200.2.1 Tomato plastid 63.92 61.98
Solyc08g081730.2.1 Tomato endoplasmic reticulum, plastid 65.49 61.85
AT1G64090.2 Thale cress cytosol, endoplasmic reticulum, nucleus 65.49 61.62
Solyc06g036430.2.1 Tomato cytosol, nucleus, plasma membrane 60.78 61.26
AT4G23630.2 Thale cress nucleus 65.88 61.09
KRH06560 Soybean endoplasmic reticulum 61.18 60.94
KRH40357 Soybean endoplasmic reticulum 61.18 60.7
KRH00872 Soybean endoplasmic reticulum 61.57 60.62
CDY44123 Canola cytosol, nucleus, plasma membrane 65.49 60.51
CDX79993 Canola cytosol, peroxisome, plasma membrane 59.22 60.16
Bra004562.1-P Field mustard cytosol, peroxisome, plasma membrane 59.22 60.16
CDY41666 Canola cytosol 65.1 60.14
Bra013717.1-P Field mustard nucleus 65.1 60.14
CDY57657 Canola cytosol, nucleus, plasma membrane 64.71 60.0
CDY10954 Canola cytosol 63.14 59.63
CDY24806 Canola cytosol 63.92 59.49
CDY42012 Canola cytosol, peroxisome, plasma membrane 58.43 59.36
CDY52012 Canola cytosol, peroxisome, plasma membrane 58.82 59.06
Bra019285.1-P Field mustard cytosol 61.96 58.96
Bra010539.1-P Field mustard cytosol 61.96 58.74
KRG99174 Soybean endoplasmic reticulum, plasma membrane 20.0 58.62
Bra000739.1-P Field mustard cytosol 61.18 58.43
Bra003455.1-P Field mustard cytosol, peroxisome, plasma membrane 58.04 58.27
CDY53913 Canola cytosol, peroxisome, plasma membrane 58.04 58.27
CDX90792 Canola cytosol, peroxisome, plasma membrane 60.78 58.05
AT2G46170.1 Thale cress cytosol, nucleus, plasma membrane 57.65 57.65
VIT_16s0050g01790.t01 Wine grape cytosol, nucleus, plasma membrane 57.25 57.48
AT3G61560.1 Thale cress cytosol, nucleus, plasma membrane 56.86 57.31
HORVU1Hr1G082010.3 Barley cytosol, nucleus, plasma membrane, plastid 58.43 57.09
AT4G11220.1 Thale cress nucleus 60.39 56.83
KRH35223 Soybean cytosol, nucleus, plasma membrane 55.29 56.4
HORVU1Hr1G017470.2 Barley cytosol, endoplasmic reticulum, nucleus 53.73 55.47
VIT_02s0025g00590.t01 Wine grape mitochondrion 12.94 55.0
CDY13240 Canola cytosol, peroxisome, plasma membrane 34.51 54.66
HORVU3Hr1G030760.2 Barley mitochondrion 67.06 54.46
KRH48008 Soybean cytosol, peroxisome, plasma membrane 63.53 51.59
CDY62522 Canola cytosol 15.69 50.0
CDY05135 Canola mitochondrion 60.0 48.88
AT4G01230.2 Thale cress cytosol 44.71 46.72
CDY48510 Canola cytosol 43.14 45.27
CDY07184 Canola cytosol, peroxisome, plasma membrane 43.14 45.27
Bra037369.1-P Field mustard cytosol 43.14 45.27
HORVU7Hr1G081290.4 Barley plastid 38.43 42.42
HORVU7Hr1G075700.2 Barley mitochondrion 49.02 41.67
HORVU5Hr1G101680.2 Barley cytosol, endoplasmic reticulum, peroxisome 41.96 41.0
KRG91601 Soybean mitochondrion 54.12 40.59
Bra035242.1-P Field mustard cytosol 31.37 40.0
HORVU3Hr1G064240.2 Barley plasma membrane 33.33 38.81
CDX86802 Canola cytosol, nucleus, peroxisome 35.69 37.14
VIT_07s0031g02730.t01 Wine grape golgi, mitochondrion, nucleus, plasma membrane 24.31 34.44
CDX89122 Canola extracellular, mitochondrion 18.43 30.72
HORVU1Hr1G083110.3 Barley plastid 34.51 30.14
HORVU4Hr1G050020.1 Barley plastid 27.45 27.03
HORVU2Hr1G060770.16 Barley plasma membrane 40.39 26.89
HORVU2Hr1G122310.2 Barley cytosol, plasma membrane 17.65 24.19
HORVU3Hr1G008400.1 Barley cytosol, peroxisome 31.37 22.99
Protein Annotations
EMBL:AK366339EMBL:AK367094EnsemblPlants:HORVU3Hr1G069970.2EnsemblPlantsGene:HORVU3Hr1G069970GO:GO:0005575GO:GO:0005622
GO:GO:0005623GO:GO:0005737GO:GO:0005783GO:GO:0005789GO:GO:0016020GO:GO:0016021
InterPro:IPR003388InterPro:ReticulonPANTHER:PTHR10994PANTHER:PTHR10994:SF99PFAM:PF02453PFscan:PS50845
SEG:segTMHMM:TMhelixUniParc:UPI00001AB8EBUniProt:F2DR21MapMan:13.7.2.1:
Description
Reticulon-like protein [Source:UniProtKB/TrEMBL;Acc:F2DR21]
Coordinates
chrchr3H:+:529838748..529843073
Molecular Weight (calculated)
28247.7 Da
IEP (calculated)
8.585
GRAVY (calculated)
0.096
Length
255 amino acids
Sequence
(BLAST)
001: MAEHKEEEPV AESMMDKISD KFHGGGGSSS SSSSDSDDDK KGSAAGVKAK IYRLFGREQP VHAVLGGGKP ADLVLWRNKK ISGGVLAGAT AIWLLFEVME
101: YHLLTLVGHC LILSLATLFL WSNVCIFIHK SPPNIPEVKI PEDLTVNIAL SLRHEINRGL FTLREIGHGR DLKKFLIVIG GLWVLSVLGS CCNFLTLSYI
201: VFVVLYTVPV LYEKYDDKVD AFGEKAMIEL KKYYAIFEEK VLSKIPKGAL KNKKH
Best Arabidopsis Sequence Match ( AT4G23630.2 )
(BLAST)
001: MAEEHKHDES VIAPEPAVEV VERESLMDKI SEKIHHGGDS SSSSSSSDDE DEKKKTKKPS SPSSSMKSKV YRLFGREQPV HKVLGGGKPA DIFMWKNKKM
101: SGGVLGGATA AWVVFELMEY HLLTLLCHVM IVVLAVLFLW SNATMFINKS PPKIPEVHIP EEPILQLASG LRIEINRGFS SLREIASGRD LKKFLIAIAG
201: LWVLSILGGC FNFLTLAYIA LVLLFTVPLA YDKYEDKVDP LGEKAMIELK KQYAVLDEKV LSKIPLGPLK NKKKD
Arabidopsis Description
RTNLB1Reticulon-like protein [Source:UniProtKB/TrEMBL;Acc:A0A178V247]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.