Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 1
- mitochondrion 1
- plasma membrane 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY44123 | Canola | cytosol, nucleus, plasma membrane | 97.45 | 97.1 |
| AT4G23630.2 | Thale cress | nucleus | 92.73 | 92.73 |
| CDY10954 | Canola | cytosol | 90.18 | 91.85 |
| CDY24806 | Canola | cytosol | 90.55 | 90.88 |
| CDY41666 | Canola | cytosol | 90.55 | 90.22 |
| CDX90792 | Canola | cytosol, peroxisome, plasma membrane | 81.82 | 84.27 |
| CDY05135 | Canola | mitochondrion | 81.45 | 71.57 |
| CDY13240 | Canola | cytosol, peroxisome, plasma membrane | 41.09 | 70.19 |
| KRH59988 | Soybean | mitochondrion | 64.73 | 70.08 |
| KRH41254 | Soybean | cytosol, nucleus, plasma membrane | 64.36 | 69.69 |
| CDY34396 | Canola | cytosol, endoplasmic reticulum, nucleus | 63.27 | 69.32 |
| CDY08353 | Canola | cytosol, endoplasmic reticulum, nucleus | 62.91 | 69.2 |
| VIT_02s0025g00640.t01 | Wine grape | cytosol, nucleus, plasma membrane | 63.27 | 69.05 |
| VIT_15s0046g01760.t01 | Wine grape | cytosol, peroxisome, plasma membrane | 64.0 | 69.02 |
| CDY38194 | Canola | cytosol, nucleus, plasma membrane | 62.55 | 68.8 |
| CDY25557 | Canola | cytosol, endoplasmic reticulum, nucleus | 62.55 | 68.53 |
| CDX79993 | Canola | cytosol, peroxisome, plasma membrane | 60.73 | 66.53 |
| CDY42012 | Canola | cytosol, peroxisome, plasma membrane | 60.36 | 66.14 |
| GSMUA_Achr8P27830_001 | Banana | cytosol, peroxisome, plasma membrane | 60.36 | 66.14 |
| Os05t0526400-01 | Rice | plasma membrane | 60.36 | 66.14 |
| TraesCS3D01G279100.1 | Wheat | cytosol, nucleus, plasma membrane | 58.55 | 64.92 |
| TraesCS3B01G313000.1 | Wheat | cytosol, nucleus, plasma membrane | 59.64 | 64.82 |
| HORVU3Hr1G069970.2 | Barley | cytosol, nucleus, plasma membrane | 60.0 | 64.71 |
| TraesCS3A01G278800.1 | Wheat | golgi | 58.18 | 64.52 |
| PGSC0003DMT400032086 | Potato | cytosol, nucleus, plasma membrane | 63.27 | 64.44 |
| Solyc08g081730.2.1 | Tomato | endoplasmic reticulum, plastid | 63.27 | 64.44 |
| Zm00001d012776_P001 | Maize | extracellular | 59.27 | 64.43 |
| Zm00001d043551_P003 | Maize | plasma membrane | 60.0 | 64.2 |
| CDY52012 | Canola | cytosol, peroxisome, plasma membrane | 59.27 | 64.17 |
| GSMUA_Achr9P05440_001 | Banana | nucleus, peroxisome, plasma membrane | 58.18 | 63.74 |
| Os01t0736900-01 | Rice | plasma membrane | 58.55 | 63.64 |
| KXG33320 | Sorghum | cytosol, nucleus, plasma membrane | 59.64 | 63.57 |
| EES19841 | Sorghum | cytosol, nucleus, plasma membrane | 58.55 | 63.14 |
| Os01t0226300-01 | Rice | plasma membrane | 40.73 | 62.92 |
| TraesCS1D01G349700.1 | Wheat | cytosol, nucleus, plasma membrane | 56.73 | 62.9 |
| TraesCS1B01G360800.1 | Wheat | cytosol, nucleus, plasma membrane | 56.73 | 62.65 |
| CDY53913 | Canola | cytosol, peroxisome, plasma membrane | 57.82 | 62.6 |
| Zm00001d038768_P001 | Maize | extracellular, mitochondrion | 57.09 | 61.81 |
| GSMUA_AchrUn_... | Banana | cytosol, nucleus, plasma membrane | 57.82 | 61.63 |
| GSMUA_Achr6P31860_001 | Banana | cytosol, nucleus, plasma membrane | 56.36 | 61.51 |
| GSMUA_Achr10P... | Banana | cytosol, endoplasmic reticulum, plasma membrane | 56.0 | 61.11 |
| CDY62522 | Canola | cytosol | 17.09 | 58.75 |
| GSMUA_Achr4P08400_001 | Banana | cytosol | 53.45 | 58.1 |
| GSMUA_Achr3P31920_001 | Banana | cytosol | 46.18 | 57.99 |
| GSMUA_Achr5P06850_001 | Banana | cytosol, nucleus, plasma membrane | 50.55 | 55.6 |
| Os02t0265900-01 | Rice | cytosol, peroxisome, plasma membrane | 45.45 | 54.35 |
| Zm00001d008982_P001 | Maize | cytosol, nucleus, plasma membrane | 54.91 | 54.12 |
| KXG31516 | Sorghum | cytosol, nucleus, plasma membrane | 55.27 | 53.52 |
| TraesCS3D01G159100.1 | Wheat | cytosol, nucleus, plasma membrane | 55.64 | 53.5 |
| Zm00001d016041_P001 | Maize | extracellular | 44.36 | 53.04 |
| TraesCS3B01G178100.1 | Wheat | cytosol, nucleus, plasma membrane | 54.91 | 52.8 |
| OQU84758 | Sorghum | cytosol, peroxisome, plasma membrane | 44.0 | 52.16 |
| TraesCS1A01G346800.3 | Wheat | plasma membrane | 46.91 | 51.19 |
| Zm00001d020229_P001 | Maize | plasma membrane | 28.0 | 50.66 |
| EER89811 | Sorghum | peroxisome | 46.91 | 50.39 |
| TraesCS7A01G341800.1 | Wheat | cytosol, peroxisome, plasma membrane, plastid | 47.27 | 50.0 |
| TraesCS7B01G241100.1 | Wheat | cytosol, peroxisome, plasma membrane, plastid | 47.27 | 50.0 |
| TraesCS7D01G337800.1 | Wheat | cytosol, peroxisome, plasma membrane, plastid | 46.91 | 49.62 |
| HORVU1Hr1G082010.3 | Barley | cytosol, nucleus, plasma membrane, plastid | 46.91 | 49.43 |
| Zm00001d037453_P001 | Maize | cytosol, peroxisome, plasma membrane | 46.91 | 49.43 |
| Zm00001d039316_P001 | Maize | cytosol, nucleus, plasma membrane | 54.91 | 49.35 |
| Os06t0503400-01 | Rice | plasma membrane | 47.27 | 49.06 |
| CDY07184 | Canola | cytosol, peroxisome, plasma membrane | 42.55 | 48.15 |
| CDY48510 | Canola | cytosol | 42.55 | 48.15 |
| HORVU3Hr1G030760.2 | Barley | mitochondrion | 54.91 | 48.09 |
| TraesCS3A01G151200.1 | Wheat | cytosol, peroxisome, plasma membrane | 55.27 | 47.2 |
| Zm00001d020729_P001 | Maize | plasma membrane | 16.0 | 46.32 |
| HORVU7Hr1G081290.4 | Barley | plastid | 38.18 | 45.45 |
| CDX86802 | Canola | cytosol, nucleus, peroxisome | 40.36 | 45.31 |
| HORVU7Hr1G075700.2 | Barley | mitochondrion | 46.91 | 43.0 |
| GSMUA_Achr3P15760_001 | Banana | cytosol | 22.18 | 40.67 |
| CDY00916 | Canola | plasma membrane | 34.18 | 39.33 |
| CDY08616 | Canola | plasma membrane | 33.45 | 38.49 |
| CDX75962 | Canola | plasma membrane | 30.91 | 37.95 |
| CDY51936 | Canola | endoplasmic reticulum, peroxisome, plasma membrane | 30.91 | 37.95 |
| CDY67571 | Canola | plasma membrane | 30.55 | 37.5 |
| CDY46172 | Canola | plastid | 27.27 | 37.13 |
| CDY66516 | Canola | endoplasmic reticulum, extracellular | 25.09 | 37.1 |
| CDX99221 | Canola | plasma membrane | 27.27 | 36.95 |
| CDX82294 | Canola | plastid | 25.09 | 35.2 |
| CDY22970 | Canola | plasma membrane | 25.09 | 35.2 |
| CDY22971 | Canola | plasma membrane | 25.09 | 35.2 |
| VIT_07s0031g02730.t01 | Wine grape | golgi, mitochondrion, nucleus, plasma membrane | 22.91 | 35.0 |
| CDX96038 | Canola | plasma membrane | 26.55 | 34.6 |
| CDX67589 | Canola | golgi, plasma membrane, vacuole | 24.73 | 33.5 |
| CDY51584 | Canola | plasma membrane | 24.73 | 33.5 |
| CDY01898 | Canola | plasma membrane | 25.45 | 33.02 |
| CDX81500 | Canola | plasma membrane | 24.73 | 32.69 |
| CDX89122 | Canola | extracellular, mitochondrion | 17.82 | 32.03 |
| CDX78209 | Canola | golgi, plasma membrane, vacuole | 23.64 | 31.71 |
| CDX71213 | Canola | plasma membrane | 23.27 | 31.53 |
| CDY48222 | Canola | cytosol, endoplasmic reticulum, plasma membrane | 23.27 | 31.53 |
| CDX73507 | Canola | cytosol, golgi, plasma membrane | 23.27 | 31.22 |
| CDY00975 | Canola | cytosol, endoplasmic reticulum, peroxisome | 26.18 | 30.13 |
| CDY36282 | Canola | plasma membrane | 23.64 | 29.15 |
| CDY08567 | Canola | cytosol | 25.45 | 29.05 |
| CDX82165 | Canola | endoplasmic reticulum, peroxisome, plasma membrane, plastid | 23.64 | 26.21 |
| CDY56712 | Canola | mitochondrion | 33.82 | 26.2 |
| CDY46067 | Canola | plasma membrane | 18.55 | 24.52 |
| CDX76854 | Canola | plasma membrane | 18.18 | 24.15 |
| CDY12701 | Canola | plasma membrane | 25.45 | 23.18 |
Protein Annotations
| MapMan:13.7.2.1 | GO:A0A078J4I4 | UniProt:A0A078J4I4 | EnsemblPlants:CDY57657 | ProteinID:CDY57657 | ProteinID:CDY57657.1 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005783 | GO:GO:0005789 |
| GO:GO:0016020 | GO:GO:0016021 | EnsemblPlantsGene:GSBRNA2T00022465001 | InterPro:IPR003388 | PFAM:PF02453 | PFscan:PS50845 |
| PANTHER:PTHR10994 | PANTHER:PTHR10994:SF70 | InterPro:Reticulon | TMHMM:TMhelix | UniParc:UPI0004EED6BD | SEG:seg |
Description
BnaC01g15350DReticulon-like protein [Source:UniProtKB/TrEMBL;Acc:A0A078J4I4]
Coordinates
chrLK033593:+:27871..29437
Molecular Weight (calculated)
30806.9 Da
IEP (calculated)
8.219
GRAVY (calculated)
-0.100
Length
275 amino acids
Sequence
(BLAST)
(BLAST)
001: MAEEHKHDES VTAPEPAVEI VERESLMDKI SEKIHHGGDS SSSSSSSDEE EYKEKKTKKP ESPSSMKSKV YRLFGREKPV HKVLGGGKPA DIFMWKDKKI
101: SGGVLGGATA AWVLFELMEY HLLTLLCHVM IVVLAVLFLW SNATMFINKS PPKIPEVHIP EEPILQLASG LRIEINRGLS SLREIASGRD LKKFLCAIVG
201: LWVLSIMGGW FNFLTLAYIA LVLLFTVPLV YDKYEDKVDP LGEKAMIEIK KQYAVLDEKV LSKIPMGPLK NKKKD
101: SGGVLGGATA AWVLFELMEY HLLTLLCHVM IVVLAVLFLW SNATMFINKS PPKIPEVHIP EEPILQLASG LRIEINRGLS SLREIASGRD LKKFLCAIVG
201: LWVLSIMGGW FNFLTLAYIA LVLLFTVPLV YDKYEDKVDP LGEKAMIEIK KQYAVLDEKV LSKIPMGPLK NKKKD
001: MAEEHKHDES VIAPEPAVEV VERESLMDKI SEKIHHGGDS SSSSSSSDDE DEKKKTKKPS SPSSSMKSKV YRLFGREQPV HKVLGGGKPA DIFMWKNKKM
101: SGGVLGGATA AWVVFELMEY HLLTLLCHVM IVVLAVLFLW SNATMFINKS PPKIPEVHIP EEPILQLASG LRIEINRGFS SLREIASGRD LKKFLIAIAG
201: LWVLSILGGC FNFLTLAYIA LVLLFTVPLA YDKYEDKVDP LGEKAMIELK KQYAVLDEKV LSKIPLGPLK NKKKD
101: SGGVLGGATA AWVVFELMEY HLLTLLCHVM IVVLAVLFLW SNATMFINKS PPKIPEVHIP EEPILQLASG LRIEINRGFS SLREIASGRD LKKFLIAIAG
201: LWVLSILGGC FNFLTLAYIA LVLLFTVPLA YDKYEDKVDP LGEKAMIELK KQYAVLDEKV LSKIPLGPLK NKKKD
Arabidopsis Description
RTNLB1Reticulon-like protein [Source:UniProtKB/TrEMBL;Acc:A0A178V247]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.