Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- nucleus 1
- plasma membrane 4
- extracellular 1
- golgi 1
- endoplasmic reticulum 1
- vacuole 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra039207.1-P | Field mustard | plasma membrane | 95.17 | 94.71 |
| CDY46067 | Canola | plasma membrane | 95.17 | 94.71 |
| AT2G23640.1 | Thale cress | cytosol, peroxisome, plasma membrane | 73.91 | 74.27 |
| VIT_00s0253g00030.t01 | Wine grape | endoplasmic reticulum, plasma membrane, vacuole | 41.06 | 39.72 |
| KRH28521 | Soybean | endoplasmic reticulum | 34.3 | 33.49 |
| KRH76938 | Soybean | endoplasmic reticulum, plasma membrane | 24.64 | 31.68 |
| Solyc02g090370.2.1 | Tomato | plasma membrane | 27.54 | 30.48 |
| PGSC0003DMT400026113 | Potato | plasma membrane, plastid | 35.75 | 30.33 |
| CDY66516 | Canola | endoplasmic reticulum, extracellular | 22.71 | 25.27 |
| CDY13240 | Canola | cytosol, peroxisome, plasma membrane | 18.36 | 23.6 |
| CDY46172 | Canola | plastid | 22.71 | 23.27 |
| CDY67571 | Canola | plasma membrane | 24.64 | 22.77 |
| CDX75962 | Canola | plasma membrane | 24.15 | 22.32 |
| CDY51936 | Canola | endoplasmic reticulum, peroxisome, plasma membrane | 24.15 | 22.32 |
| CDX71213 | Canola | plasma membrane | 21.26 | 21.67 |
| CDY48222 | Canola | cytosol, endoplasmic reticulum, plasma membrane | 21.26 | 21.67 |
| CDY52012 | Canola | cytosol, peroxisome, plasma membrane | 26.57 | 21.65 |
| CDY53913 | Canola | cytosol, peroxisome, plasma membrane | 26.57 | 21.65 |
| CDY22970 | Canola | plasma membrane | 20.29 | 21.43 |
| CDX82294 | Canola | plastid | 20.29 | 21.43 |
| CDX99221 | Canola | plasma membrane | 20.77 | 21.18 |
| CDX79993 | Canola | cytosol, peroxisome, plasma membrane | 25.6 | 21.12 |
| CDY22971 | Canola | plasma membrane | 19.81 | 20.92 |
| CDY42012 | Canola | cytosol, peroxisome, plasma membrane | 25.12 | 20.72 |
| CDY36282 | Canola | plasma membrane | 22.22 | 20.63 |
| CDY08353 | Canola | cytosol, endoplasmic reticulum, nucleus | 24.64 | 20.4 |
| CDX96038 | Canola | plasma membrane | 20.29 | 19.91 |
| CDY00975 | Canola | cytosol, endoplasmic reticulum, peroxisome | 22.71 | 19.67 |
| CDY38194 | Canola | cytosol, nucleus, plasma membrane | 23.67 | 19.6 |
| CDY25557 | Canola | cytosol, endoplasmic reticulum, nucleus | 23.67 | 19.52 |
| CDY34396 | Canola | cytosol, endoplasmic reticulum, nucleus | 23.67 | 19.52 |
| CDY08567 | Canola | cytosol | 22.22 | 19.09 |
| CDY01898 | Canola | plasma membrane | 19.32 | 18.87 |
| CDY41666 | Canola | cytosol | 25.12 | 18.84 |
| CDX89122 | Canola | extracellular, mitochondrion | 13.53 | 18.3 |
| CDY24806 | Canola | cytosol | 24.15 | 18.25 |
| CDX67589 | Canola | golgi, plasma membrane, vacuole | 17.87 | 18.23 |
| CDY57657 | Canola | cytosol, nucleus, plasma membrane | 24.15 | 18.18 |
| CDY10954 | Canola | cytosol | 23.67 | 18.15 |
| CDX78209 | Canola | golgi, plasma membrane, vacuole | 17.87 | 18.05 |
| CDY08616 | Canola | plasma membrane | 20.77 | 17.99 |
| CDY00916 | Canola | plasma membrane | 20.77 | 17.99 |
| CDY44123 | Canola | cytosol, nucleus, plasma membrane | 23.67 | 17.75 |
| CDX90792 | Canola | cytosol, peroxisome, plasma membrane | 22.71 | 17.6 |
| CDX73507 | Canola | cytosol, golgi, plasma membrane | 17.39 | 17.56 |
| CDY62522 | Canola | cytosol | 6.76 | 17.5 |
| CDY51584 | Canola | plasma membrane | 16.91 | 17.24 |
| CDX81500 | Canola | plasma membrane | 16.91 | 16.83 |
| CDX86802 | Canola | cytosol, nucleus, peroxisome | 19.32 | 16.33 |
| CDY07184 | Canola | cytosol, peroxisome, plasma membrane | 18.36 | 15.64 |
| CDY48510 | Canola | cytosol | 17.87 | 15.23 |
| CDY05135 | Canola | mitochondrion | 22.71 | 15.02 |
| CDX82165 | Canola | endoplasmic reticulum, peroxisome, plasma membrane, plastid | 17.39 | 14.52 |
| CDY56712 | Canola | mitochondrion | 21.74 | 12.68 |
| CDY12701 | Canola | plasma membrane | 17.87 | 12.25 |
Protein Annotations
| EnsemblPlants:CDX76854 | EnsemblPlantsGene:GSBRNA2T00127364001 | GO:A0A078CLD6 | InterPro:IPR003388 | InterPro:Reticulon | PANTHER:PTHR10994 |
| PANTHER:PTHR10994:SF86 | PFAM:PF02453 | PFscan:PS50845 | ProteinID:CDX76854 | ProteinID:CDX76854.1 | TMHMM:TMhelix |
| UniParc:UPI0004EBD7BC | MapMan:13.7.2.1 | : | : | : | : |
Description
BnaC08g34400D
Coordinates
chrLK031808:-:1497718..1499216
Molecular Weight (calculated)
23804.2 Da
IEP (calculated)
10.015
GRAVY (calculated)
-0.007
Length
207 amino acids
Sequence
(BLAST)
(BLAST)
001: MANDVSKNTS PKSEDTTLED IYLWRRKKLA FSVLLVSTAT WVLINIYGFS SITIVSWAAM AIVSMVFLWG SLLRLSKVEP DLSGLEVSDE FVAETARSCR
101: KLMEEIVRWM FTVGVESEWF VFAKTILGVW ILSRIGNLLD FHTFLFIGLV IGLTLPKLWE KHGDRLQKLS RNLKDRSNEA YNNSREKILK MKKKLQHGTE
201: EKVKKAE
101: KLMEEIVRWM FTVGVESEWF VFAKTILGVW ILSRIGNLLD FHTFLFIGLV IGLTLPKLWE KHGDRLQKLS RNLKDRSNEA YNNSREKILK MKKKLQHGTE
201: EKVKKAE
001: MANDVTKDPT PKSDIVEDIY LWRRKKLAFS TLLVSTSTWI LLSFYGFTTI TIVSWIGIAV VSMIFLWGSL LRLLSKVEPE LSGLEVSEEF VVETVRSCRM
101: LMEEMVRWMF RVGAESEWFV FARTVLGFWI LSRIGNLLDF HTCLFIGLVM GLTVPKLWEE YGDQIQKHLG SLKDKSKGAY NTTHEKILEM KNKLHHGTEE
201: KVKKSE
101: LMEEMVRWMF RVGAESEWFV FARTVLGFWI LSRIGNLLDF HTCLFIGLVM GLTVPKLWEE YGDQIQKHLG SLKDKSKGAY NTTHEKILEM KNKLHHGTEE
201: KVKKSE
Arabidopsis Description
RTNLB13Reticulon-like protein B13 [Source:UniProtKB/Swiss-Prot;Acc:O64837]
SUBAcon: [cytosol,plasma membrane,peroxisome]
SUBAcon: [cytosol,plasma membrane,peroxisome]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.