Factsheet for VIT_00s0253g00030.t01

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, vacuole, plasma membrane

Predictor Summary:

plastid 1
endoplasmic reticulum 2
plasma membrane 3
extracellular 1
vacuole 2
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum, plasma membrane, vacuole
Any Predictor:	plastid, secretory
BaCelLo:	plastid
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	plasma membrane
PProwler:	secretory
WoLF PSORT:	vacuole
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH76938	Soybean	endoplasmic reticulum, plasma membrane	36.45	48.45
KRH28521	Soybean	endoplasmic reticulum	44.86	45.28
AT2G23640.1	Thale cress	cytosol, peroxisome, plasma membrane	41.59	43.2
Bra039207.1-P	Field mustard	plasma membrane	40.65	41.83
CDY46067	Canola	plasma membrane	40.65	41.83
CDX76854	Canola	plasma membrane	39.72	41.06
PGSC0003DMT400026113	Potato	plasma membrane, plastid	40.65	35.66
Solyc02g090370.2.1	Tomato	plasma membrane	30.84	35.29
VIT_03s0180g00170.t01	Wine grape	endoplasmic reticulum, plasma membrane, vacuole	25.23	26.09
VIT_15s0046g01760.t01	Wine grape	cytosol, peroxisome, plasma membrane	29.91	25.1
VIT_02s0025g00640.t01	Wine grape	cytosol, nucleus, plasma membrane	28.97	24.6
VIT_08s0007g01720.t01	Wine grape	plasma membrane	23.83	24.4
VIT_16s0050g01790.t01	Wine grape	cytosol, nucleus, plasma membrane	27.57	23.23
VIT_12s0028g01090.t01	Wine grape	cytosol, peroxisome, plasma membrane	22.43	19.35
VIT_17s0000g03260.t01	Wine grape	plasma membrane	19.16	19.34
VIT_02s0025g00590.t01	Wine grape	mitochondrion	4.67	16.67
VIT_01s0011g04030.t01	Wine grape	cytosol	23.36	13.37
VIT_07s0031g02730.t01	Wine grape	golgi, mitochondrion, nucleus, plasma membrane	10.75	12.78
VIT_13s0067g02960.t01	Wine grape	endoplasmic reticulum, peroxisome, plasma membrane	17.29	11.31

Protein Annotations

EntrezGene:100261514	wikigene:100261514	MapMan:13.7.2.1	ProteinID:CBI18559	ProteinID:CBI18559.3	UniProt:D7SSC7
EMBL:FN594975	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005783
GO:GO:0005789	GO:GO:0008150	GO:GO:0009987	GO:GO:0016020	GO:GO:0016021	GO:GO:0016043
GO:GO:0071458	GO:GO:0071782	GO:GO:0071786	InterPro:IPR003388	EntrezGene:LOC100261514	wikigene:LOC100261514
PFAM:PF02453	PFscan:PS50845	PANTHER:PTHR10994	PANTHER:PTHR10994:SF86	InterPro:Reticulon	TMHMM:TMhelix
UniParc:UPI00019860EB	ArrayExpress:VIT_00s0253g00030	EnsemblPlantsGene:VIT_00s0253g00030	EnsemblPlants:VIT_00s0253g00030.t01	unigene:Vvi.22772	RefSeq:XP_002270797
RefSeq:XP_002270797.1	SEG:seg	:	:	:	:

Description

Reticulon-like protein [Source:UniProtKB/TrEMBL;Acc:D7SSC7]

Coordinates

chrUn:-:17731265..17732433

Molecular Weight (calculated)

24948.0 Da

IEP (calculated)

9.073

GRAVY (calculated)

0.096

Length

214 amino acids

Sequence
(BLAST)

001: MSSTEKSSQP ILDLARDILL WRRKKMSVMV FFISTATWVL MEVYQFNSIT IVCWVGMAVV TSLFIWGNMC RLLGKEPPSL SGLEITEQST TEMTILFRES
101: IEEAVRWMFR VGAESEWYVF AGVVTGLWIL SIVGSCMDLL TLAYIGIMMS VTIPVIYIKY EDKIKRYGER VKVHWRKLVE IVDEKVFMNV KNKLFKQKEK
201: ENEKKGMEKE KKIE

Best Arabidopsis Sequence Match ( AT2G23640.1 )
(BLAST)

001: MANDVTKDPT PKSDIVEDIY LWRRKKLAFS TLLVSTSTWI LLSFYGFTTI TIVSWIGIAV VSMIFLWGSL LRLLSKVEPE LSGLEVSEEF VVETVRSCRM
101: LMEEMVRWMF RVGAESEWFV FARTVLGFWI LSRIGNLLDF HTCLFIGLVM GLTVPKLWEE YGDQIQKHLG SLKDKSKGAY NTTHEKILEM KNKLHHGTEE
201: KVKKSE

Arabidopsis Description

RTNLB13Reticulon-like protein B13 [Source:UniProtKB/Swiss-Prot;Acc:O64837]
SUBAcon: [peroxisome,cytosol,plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.