Factsheet for Solyc02g090370.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

nucleus 1
plasma membrane 4
extracellular 1
endoplasmic reticulum 1
vacuole 1
golgi 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	nucleus, peroxisome, secretory
BaCelLo:	nucleus
MultiLoc:	plasma membrane
Plant-mPloc:	plasma membrane
PProwler:	secretory
WoLF PSORT:	plasma membrane
YLoc:	peroxisome

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400026113	Potato	plasma membrane, plastid	85.03	65.16
VIT_00s0253g00030.t01	Wine grape	endoplasmic reticulum, plasma membrane, vacuole	35.29	30.84
KRH28521	Soybean	endoplasmic reticulum	33.16	29.25
AT2G23640.1	Thale cress	cytosol, peroxisome, plasma membrane	30.48	27.67
CDX76854	Canola	plasma membrane	30.48	27.54
Bra039207.1-P	Field mustard	plasma membrane	30.48	27.4
CDY46067	Canola	plasma membrane	30.48	27.4
KRH76938	Soybean	endoplasmic reticulum, plasma membrane	22.99	26.71
Solyc06g049060.2.1	Tomato	mitochondrion, plasma membrane	22.46	22.11
Solyc09g013110.2.1	Tomato	cytosol, plasma membrane, vacuole	23.53	21.05
Solyc05g008890.2.1	Tomato	plasma membrane	23.53	19.91
Solyc03g119190.2.1	Tomato	plasma membrane	21.93	18.72
Solyc01g107620.2.1	Tomato	plasma membrane	20.86	17.81
Solyc08g081730.2.1	Tomato	endoplasmic reticulum, plastid	25.67	17.78
Solyc01g095200.2.1	Tomato	plastid	24.6	17.49
Solyc10g011870.2.1	Tomato	cytosol, nucleus, plasma membrane	24.06	17.11
Solyc07g044880.2.1	Tomato	mitochondrion	12.83	16.9
Solyc09g055250.2.1	Tomato	cytosol, endoplasmic reticulum, peroxisome	21.39	16.39
Solyc06g036430.2.1	Tomato	cytosol, nucleus, plasma membrane	21.93	16.21
Solyc03g007740.2.1	Tomato	nucleus	21.93	16.08
Solyc12g006290.1.1	Tomato	nucleus	19.25	15.45
Solyc06g082740.2.1	Tomato	nucleus	17.65	14.41

Protein Annotations

MapMan:13.7.2.1	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005783
GO:GO:0005789	GO:GO:0008150	GO:GO:0009987	GO:GO:0016020	GO:GO:0016021	GO:GO:0016043
GO:GO:0071458	GO:GO:0071782	GO:GO:0071786	InterPro:IPR003388	UniProt:K4BCI6	PFAM:PF02453
PFscan:PS50845	PANTHER:PTHR10994	PANTHER:PTHR10994:SF86	InterPro:Reticulon	EnsemblPlantsGene:Solyc02g090370.2	EnsemblPlants:Solyc02g090370.2.1
TMHMM:TMhelix	UniParc:UPI000276923E	SEG:seg	:	:	:

Description

Reticulon-like protein [Source:UniProtKB/TrEMBL;Acc:K4BCI6]

Coordinates

chr2:+:51927602..51929459

Molecular Weight (calculated)

20978.2 Da

IEP (calculated)

4.711

GRAVY (calculated)

0.205

Length

187 amino acids

Sequence
(BLAST)

001: MQQQTTTSTD SPTPQLENHS DSESNLHTST DSPTPDVNVG KTSTDILRDV ILWKRKSFTV AALLAATAIW LALEVYGLTF ITLFSWIAMF LIVSTFLWGN
101: IHMLLGKEPL DMSRMYISDE SVVEAGIKFR ESVENSLRFL FNVSTKREWF VFAGTVASLG LLSVVGSYLD LLTLLYIGNY NTTYMIN

Best Arabidopsis Sequence Match ( AT2G23640.1 )
(BLAST)

001: MANDVTKDPT PKSDIVEDIY LWRRKKLAFS TLLVSTSTWI LLSFYGFTTI TIVSWIGIAV VSMIFLWGSL LRLLSKVEPE LSGLEVSEEF VVETVRSCRM
101: LMEEMVRWMF RVGAESEWFV FARTVLGFWI LSRIGNLLDF HTCLFIGLVM GLTVPKLWEE YGDQIQKHLG SLKDKSKGAY NTTHEKILEM KNKLHHGTEE
201: KVKKSE

Arabidopsis Description

RTNLB13Reticulon-like protein B13 [Source:UniProtKB/Swiss-Prot;Acc:O64837]
SUBAcon: [peroxisome,cytosol,plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.