Factsheet for Solyc09g013110.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, vacuole, cytosol

Predictor Summary:

plastid 1
cytosol 1
plasma membrane 3
extracellular 1
endoplasmic reticulum 1
vacuole 2
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, plasma membrane, vacuole
Any Predictor:	cytosol, plastid, secretory
BaCelLo:	plastid
MultiLoc:	cytosol
Plant-mPloc:	plasma membrane
PProwler:	secretory
WoLF PSORT:	vacuole
YLoc:	plasma membrane

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc01g056390.1.1
Solyc01g056400.1.1
Solyc01g056430.1.1
Solyc01g056450.1.1
Solyc01g060130.2.1
Solyc01g100350.2.1
Solyc06g011290.1.1
Solyc06g011330.1.1
Solyc06g066620.2.1
Solyc08g081730.2.1
Solyc10g083550.1.1
Solyc10g083830.1.1
Solyc10g083840.1.1
Solyc10g083850.1.1
Solyc12g007130.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G54120.1	Solyc06g066620.2.1	AT1G52220.1	21798944
AT3G54120.1	Solyc01g060130.2.1	AT1G56330.1	21798944
AT3G54120.1	Solyc01g100350.2.1	AT1G56330.1	21798944
AT3G54120.1	Solyc12g007130.1.1	AT2G20130.1	21798944
AT3G54120.1	Solyc01g056390.1.1	AT3G53180.1	21798944
AT3G54120.1	Solyc01g056400.1.1	AT3G53180.1	21798944
AT3G54120.1	Solyc01g056430.1.1	AT3G53180.1	21798944
AT3G54120.1	Solyc01g056450.1.1	AT3G53180.1	21798944
AT3G54120.1	Solyc06g011290.1.1	AT3G53180.1	21798944
AT3G54120.1	Solyc06g011330.1.1	AT3G53180.1	21798944
AT3G54120.1	Solyc10g083550.1.1	AT3G53180.1	21798944
AT3G54120.1	Solyc10g083830.1.1	AT3G53180.1	21798944
AT3G54120.1	Solyc10g083840.1.1	AT3G53180.1	21798944
AT3G54120.1	Solyc10g083850.1.1	AT3G53180.1	21798944
AT3G54120.1	Solyc08g081730.2.1	AT4G11220.1	21798944
AT3G54120.1	Solyc08g081730.2.1	AT5G41600.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400052428	Potato	cytosol, plasma membrane, vacuole	95.69	95.69
VIT_08s0007g01720.t01	Wine grape	plasma membrane	73.68	73.68
KRH66004	Soybean	endoplasmic reticulum, golgi, plasma membrane	69.38	69.38
KRH75801	Soybean	plasma membrane	66.99	66.99
CDX67589	Canola	golgi, plasma membrane, vacuole	51.67	53.2
Bra003171.1-P	Field mustard	plasma membrane	51.2	52.71
CDY51584	Canola	plasma membrane	50.72	52.22
AT3G54120.1	Thale cress	cytosol, plasma membrane, vacuole	50.24	51.72
Bra007047.1-P	Field mustard	golgi, plasma membrane, vacuole	48.8	49.76
CDX78209	Canola	golgi, plasma membrane, vacuole	48.8	49.76
CDX73507	Canola	cytosol, golgi, plasma membrane	47.37	48.29
GSMUA_Achr10P...	Banana	plasma membrane	53.11	48.26
GSMUA_Achr8P02250_001	Banana	cytosol, mitochondrion, peroxisome, plasma membrane	54.07	45.75
Os04t0367400-02	Rice	plasma membrane	44.5	43.66
EES03891	Sorghum	golgi, peroxisome, plasma membrane	44.02	43.4
Zm00001d042846_P001	Maize	plasma membrane	43.06	42.86
GSMUA_Achr6P33560_001	Banana	plasma membrane	53.11	42.05
Solyc06g049060.2.1	Tomato	mitochondrion, plasma membrane	37.32	41.05
Os01t0851300-01	Rice	golgi, plasma membrane, vacuole	38.76	39.9
Solyc01g107620.2.1	Tomato	plasma membrane	41.15	39.27
OQU78555	Sorghum	extracellular	39.23	37.1
Solyc03g007740.2.1	Tomato	nucleus	40.67	33.33
Solyc06g036430.2.1	Tomato	cytosol, nucleus, plasma membrane	40.19	33.2
Solyc08g081730.2.1	Tomato	endoplasmic reticulum, plastid	41.63	32.22
Solyc06g082740.2.1	Tomato	nucleus	34.45	31.44
Zm00001d039213_P001	Maize	golgi, plasma membrane, plastid	34.93	31.2
Solyc03g119190.2.1	Tomato	plasma membrane	32.54	31.05
Solyc10g011870.2.1	Tomato	cytosol, nucleus, plasma membrane	38.76	30.8
Solyc09g055250.2.1	Tomato	cytosol, endoplasmic reticulum, peroxisome	34.45	29.51
Solyc05g008890.2.1	Tomato	plasma membrane	31.1	29.41
Solyc07g044880.2.1	Tomato	mitochondrion	19.62	28.87
Solyc12g006290.1.1	Tomato	nucleus	32.06	28.76
Solyc01g095200.2.1	Tomato	plastid	35.89	28.52
Solyc02g090370.2.1	Tomato	plasma membrane	21.05	23.53

Protein Annotations

EnsemblPlants:Solyc09g013110.2.1	EnsemblPlantsGene:Solyc09g013110.2	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005783	GO:GO:0005789	GO:GO:0016020	GO:GO:0016021	InterPro:IPR003388	InterPro:Reticulon
PANTHER:PTHR10994	PANTHER:PTHR10994:SF65	PFAM:PF02453	PFscan:PS50845	SEG:seg	TMHMM:TMhelix
UniParc:UPI000276B727	UniProt:K4CRN7	MapMan:13.7.2.1	:	:	:

Description

Reticulon-like protein [Source:UniProtKB/TrEMBL;Acc:K4CRN7]

Coordinates

chr9:+:5513447..5516464

Molecular Weight (calculated)

23684.3 Da

IEP (calculated)

9.425

GRAVY (calculated)

0.480

Length

209 amino acids

Sequence
(BLAST)

001: MDSSDKLFNR QRSLHQILGG SFVADVVLWR RKDVTVGILV VTLFAWVVFE RSGYTLLSLV SSVFFLLFAI LFLWSKSAAI LNRPAPPLPH LYLSEEMVNE
101: AAYFIRNHIN MILSVSEDIA LGKDTNMYVK VSAGLMLVSV VGGLTDFLTL GYTSLVIVLT VPALYEKYED QVDAYVLMAY RKLWLLYRKF DAVCVNKVSR
201: LSLEKKKLS

Best Arabidopsis Sequence Match ( AT3G54120.1 )
(BLAST)

001: MSSSSDKLFN RDRTIHEILG GGIVADVMLW RKKNVSVGIV TVTIASWMVF EAFAYTIFTL ISSVLLLLLS ILFLWSKSAS ILNRPSPPLP EFQISEAMAE
101: EASIWLRIHV NKLLQVSHDI AMARDSELYT KVAVSLFLLS LIGSLMDFQT LCHTSVLVVM TVPAFYERYE DYIVGSIEFI CNKTRELYLR LEIWANPENK
201: KLS

Arabidopsis Description

RTNLB12Reticulon-like protein B12 [Source:UniProtKB/Swiss-Prot;Acc:Q9M392]
SUBAcon: [plasma membrane,vacuole,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.