Factsheet for Solyc10g083830.1.1

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

nucleus 1
cytosol 2
plastid 1
mitochondrion 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

extracellular: 29876421

msms PMID: 29876421 doi

L Ceballos-Laita, E Gutierrez-Carbonell, D Takahashi, A Abadía, M Uemura, J Abadía, AF López-Millán

Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, Morioka 020-8550, Japan., Plant Stress Physiology Group, Plant Nutrition Department, Aula Dei Experimental Station, CSIC, P.O. Box 13034, 50080 Zaragoza, Spain., United Graduate School of Agricultural Sciences, Iwate University, Morioka 020-8550, Japan., USDA-ARS Children's Nutrition Research Center, Department of Pediatrics, Baylor College of Medicine, 1100 Bates St., Houston, TX 77030, USA.

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc01g073730.2.1
Solyc02g082060.1.1
Solyc05g007200.2.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G53180.1	Solyc05g007200.2.1	AT1G14340.1	21798944
AT3G53180.1	Solyc01g073730.2.1	AT2G31955.1	21798944
AT3G53180.1	Solyc02g082060.1.1	AT4G25660.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400072665	Potato	cytosol	56.44	98.02
Solyc01g056400.1.1	Tomato	endoplasmic reticulum, extracellular	7.18	66.67
Solyc10g083550.1.1	Tomato	cytosol	41.44	63.66
GSMUA_AchrUn_...	Banana	cytosol	52.69	62.48
Zm00001d031055_P001	Maize	cytosol	16.31	62.11
Zm00001d047936_P001	Maize	cytosol	17.78	60.89
Zm00001d044569_P001	Maize	cytosol	17.78	60.89
Zm00001d033947_P001	Maize	cytosol	10.6	58.04
Solyc06g011330.1.1	Tomato	cytosol	27.24	56.04
VIT_08s0007g04670.t01	Wine grape	cytosol	73.9	53.93
CDY13313	Canola	cytosol	67.05	50.24
Bra028548.1-P	Field mustard	cytosol	66.72	50.06
KRH32570	Soybean	cytosol, nucleus	67.7	49.64
CDX73575	Canola	cytosol	65.91	49.27
CDX67559	Canola	cytosol	66.72	49.16
Zm00001d021367_P001	Maize	cytosol	16.31	48.31
CDX78151	Canola	cytosol	66.72	48.29
Bra006975.1-P	Field mustard	cytosol	66.72	48.29
Solyc01g056450.1.1	Tomato	cytosol	19.09	47.95
AT3G53180.1	Thale cress	cytosol	66.07	47.54
HORVU1Hr1G038060.9	Barley	cytosol	65.25	47.39
TraesCS1A01G143000.1	Wheat	cytosol	64.93	47.32
TraesCS1B01G158600.1	Wheat	cytosol	64.76	47.15
TraesCS1D01G141800.1	Wheat	golgi	64.6	47.03
Zm00001d032815_P011	Maize	cytosol	63.78	46.44
EER91525	Sorghum	cytosol	63.46	46.2
Os10t0456500-02	Rice	plasma membrane	63.46	46.04
Solyc10g083850.1.1	Tomato	cytosol	58.56	43.1
TraesCS6D01G065600.1	Wheat	cytosol	56.61	42.58
HORVU6Hr1G012290.5	Barley	cytosol	57.42	41.76
KRH32567	Soybean	endoplasmic reticulum	18.43	26.22
Solyc06g011290.1.1	Tomato	cytosol	14.85	23.33
Solyc01g056430.1.1	Tomato	cytosol	12.4	23.03
GSMUA_AchrUn_...	Banana	cytosol	11.75	22.5
Solyc01g056390.1.1	Tomato	cytosol, nucleus	0.65	3.67
KRH75546	Soybean	plastid	0.98	2.61
Solyc10g083840.1.1	Tomato	cytosol	0.0	0.0

Protein Annotations

KEGG:00220+6.3.1.2	KEGG:00250+6.3.1.2	KEGG:00630+6.3.1.2	KEGG:00910+6.3.1.2	Gene3D:3.10.20.70	Gene3D:3.20.20.140
Gene3D:3.30.590.10	MapMan:35.2	InterPro:Amidohydro-rel	GO:GO:0003674	GO:GO:0003824	GO:GO:0004356
GO:GO:0006542	GO:GO:0006807	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0016787	InterPro:Gln_synt_N	InterPro:Gln_synth/guanido_kin_cat_dom	InterPro:Gln_synth_cat_dom	InterPro:IPR036651	UniProt:K4D3G9
InterPro:Metal_Hydrolase	PFAM:PF00120	PFAM:PF04909	PANTHER:PTHR43785	PANTHER:PTHR43785:SF2	SMART:SM01230
SUPFAM:SSF51556	SUPFAM:SSF54368	SUPFAM:SSF55931	EnsemblPlantsGene:Solyc10g083830.1	EnsemblPlants:Solyc10g083830.1.1	UniParc:UPI000276A0B8

Description

No Description!

Coordinates

chr10:-:63569847..63577796

Molecular Weight (calculated)

68259.0 Da

IEP (calculated)

6.214

GRAVY (calculated)

-0.107

Length

613 amino acids

Sequence
(BLAST)

001: MQIHTGFGDK DLDLRLANPL HLRNLLEDKR FMKNRLVLLH ASYPFSKEAS YLASVYPQVF LDFGLAIPKL SFHGMVSSVK ELLELAPMNK IMFSTDGYAF
101: AETFYLGAKK AREVVFSVLR DACVDGDLSI PEAIVAVKDV FAENAKQFYK LDVSSRYSDV KPPLLSFFQA EELHESSKDV TFVRIIWIDA SGQHRCRVVP
201: QQRFYSSVQK HGVGLTCACM GMSSTSDGPA VDTNLSASGE TRIVPDLSTK CRLPWNKQQE MVLADMYIEP GKVWEYCPRE ALRRVSKVLK DEFDLVVNAG
301: FENEFYLLKS ILRNGKEEWT PFDRTSYCST SSFDAASPIL EEVFASLQSL NIAVEQLHAE AGKGQFEIAL KYTDCFRAAD SLIFAREVIK AVARKHGLLA
401: TFVPKYALDD IGSGSHVHVS LSKNGENVFM TSGEPSRYGM SKIGEAFMAG VLNHLPAILP FTAPLPNSYD RIQPNMWSGA YLCWGKENRE APLRAASPPG
501: VAHGLISNFE IKAFDGCANP YLGLAAIISA GIDGLRRNLS LPEPVDGDPD ILKENLQRLP VTLAESVEAL EKDPLFKEMI GENLLVAIIG VRKAEVKYYS
601: ENKEGYKDLI FKY

Best Arabidopsis Sequence Match ( AT3G53180.1 )
(BLAST)

001: MEFSELKEAI EKIELVDAHA HNIVSLDSSF PFIGTFSEAA GDALTFAPHS LSFKRNLREI AQLYGTEVSL EAVEEHRKTS GLDSFTSKCF KEARISALLI
101: DDGLKLDKKH DIEWHRNFVP FVGRVLRIET LAEQILEEEC PGGYFYGSES TEPPVWDLDS FTKTFVERLN SLVPEIVALK TIAAYRSGLD IDTYVSKEVA
201: ENGLVEVLRA GKPVRIGNKG LIDYILTISL EVAVRRDLPL QIHTGFGDKD LDLRLSNPLH LRTLLEDKRF GKCRIVLLHA AYPFSKEASF LSSVYPQVYL
301: DFGLAVPKLS VHGMVSSVKE LLDLASIKKV MFSTDGYASP ETYYLGAKKA REVIFLVLSD ACASGDLSLM EAIDAAKDIF SRNSIGFYKL NIDTDSSSPQ
401: NIISPKLKIK EPDVQEDSSS FVRIIWVDTS GQQRCRAVQA QRFNRSVKKN GVGLTFASMG MTSFTDGPAE ESKLTGVGEI RLVPDLSTKQ TIPWTKQESM
501: VLADMQLKPG EAWGYCPRET LRRVAKVLKD EFDLVMNAGF ENEFYLLKNV VREGKEEYMP FDFGPYCATS SFDAASPIFH DIVPALESLN IEVEQFHAES
601: GKGQFEVSLG HTIASHAADN LVYTREVIRS VARKQGLLAT FVPKYDYCDI GSGSHVHLSL WKNGENVFPA SNNSSSHGIS SVGEEFMAGV LFHLPSILAI
701: IAPLPNSYDR IQPNTWSGAF QCWGKENREA ALRAASPPGT PDGLVTNFEI KSFDGSANPH LGLAVIMAAG IDGLRRHLQL PTPIDINPAD VAATLNRLPE
801: TLSEAVEALD KDKVLHDLLG QKLLVAIKGV RKAEVEYYSK NPDAYKQLIH RY

Arabidopsis Description

Nodulin/glutamine synthase-like protein [Source:UniProtKB/TrEMBL;Acc:F4J9A0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.